Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1973.0 1120 100.0
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1567.7 1139 74.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1392.1 1499 61.2
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1080.1 1375 51.2
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 1.1e-295 1020.4 1339 50.1
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 1.5e-294 1016.5 1492 47.2
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 3.8e-277 958.7 1285 48.7
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 4.2e-276 955.3 1364 46.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 2.7e-259 899.4 1294 46.8
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 2.3e-258 896.3 1329 46.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 1.7e-253 880.2 1317 44.5
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 4.2e-252 875.5 1402 42.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 4.0e-250 869.0 1316 44.3
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 3.8e-245 852.4 1271 44.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 5.5e-244 848.6 1353 43.4
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 3.0e-242 842.8 1387 40.8
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 9.8e-241 837.8 1355 43.7
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 1.4e-239 833.9 1337 45.3
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 1.0e-237 827.8 1335 43.5
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 2.2e-237 826.6 1435 40.5
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 3.8e-237 825.9 1344 44.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 2.5e-236 823.2 1318 43.2
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 1.4e-234 817.4 1296 43.0
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 3.0e-234 816.2 1309 42.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-229 800.8 488 84.6
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 6.6e-229 798.5 1406 40.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 1.1e-228 797.7 1305 43.1
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 1.9e-228 797.0 1290 40.7
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 5.2e-226 788.9 1472 38.3
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 4.4e-225 785.8 1456 38.3
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 1.1e-223 781.2 1374 41.5
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 2.0e-222 776.9 1305 41.8
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 7.8e-222 775.0 1289 42.4
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 7.8e-222 775.0 1303 41.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 3.9e-221 772.7 1437 39.7
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 1.1e-220 771.2 1323 41.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 4.3e-220 769.2 1426 38.1
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.2e-219 767.7 1341 40.2
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 2.8e-219 766.5 1423 38.3
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 2.8e-219 766.5 1297 42.6
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 3.6e-219 766.1 1461 39.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 2.3e-218 763.5 1471 39.0
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 4.4e-217 759.2 1341 41.8
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 6.4e-216 755.4 1423 41.2
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.1e-215 754.6 1326 38.8
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.4e-215 754.2 1327 38.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 4.1e-215 752.7 1213 44.3
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.0e-215 751.9 1248 40.9
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.5e-214 749.6 1248 40.7
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 6.0e-214 748.8 1283 45.0
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 1.0e-213 748.0 1292 39.4
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 1.9e-212 743.8 1455 37.1
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 2.1e-211 740.3 1420 36.5
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 6.2e-211 738.8 1242 42.4
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 8.1e-211 738.4 1194 44.6
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.4e-210 737.6 1227 41.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.0e-210 736.1 1195 44.3
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 1.2e-209 734.6 1239 42.2
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 3.4e-209 733.0 1291 40.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 2.2e-208 730.3 1278 40.8
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 2.2e-208 730.3 1497 35.9
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 7.1e-207 725.3 1272 41.3
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 8.6e-205 718.4 1271 40.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 5.6e-204 715.7 1337 40.6
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 9.5e-204 714.9 1365 42.9
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 9.5e-204 714.9 1265 41.0
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.8e-203 713.4 1276 41.1
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 6.2e-203 712.2 1297 39.6
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 5.2e-202 709.1 1391 42.1
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 7.6e-201 705.3 1426 36.2
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 2.2e-200 703.7 1231 41.3
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 7.1e-199 698.7 1291 39.6
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 3.5e-198 696.4 1275 39.3
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 2.6e-193 680.2 1499 34.8
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.9e-191 674.1 1290 38.6
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.9e-191 674.1 1355 38.6
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.2e-190 671.4 1231 40.1
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 6.0e-190 669.1 1148 42.2
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.7e-189 667.5 1713 32.5
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 8.7e-189 665.2 1381 37.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 3.3e-188 663.3 1469 37.2
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 4.8e-179 632.9 1308 37.5
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.1e-178 631.7 1254 41.1
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 3.2e-175 620.2 1224 36.6
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.2e-175 619.8 1371 37.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.5e-175 619.4 874 43.1
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 7.4e-172 609.0 1301 36.9
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.6e-163 581.3 1310 36.0
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.4e-162 577.4 711 47.1
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.2e-160 570.9 1083 40.3
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.3e-156 557.0 697 47.3
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.3e-148 530.4 669 46.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 3.6e-126 457.2 1196 31.4
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 3.1e-122 444.1 829 38.4
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.6e-121 441.8 1150 32.9
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.9e-119 434.9 736 39.4
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.5e-113 413.7 422 60.0
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.6e-110 405.2 1190 31.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.2e-108 399.1 1131 31.3
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.6e-105 388.7 2219 25.9
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.0e-104 383.6 402 60.2
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.2e-94 350.1 406 51.7
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.1e-93 347.8 1199 27.5
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.6e-92 344.7 1350 27.1
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.1e-90 339.3 242 78.1
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.7e-89 334.7 433 45.0
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.8e-86 324.7 671 34.0
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.2e-83 315.1 327 56.0
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.7e-80 305.4 337 52.2
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 9.3e-74 283.1 604 33.8
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 6.7e-64 250.4 223 64.1
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 8.7e-56 223.4 1302 28.6
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.5e-55 221.9 254 48.8
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.7e-54 218.0 377 35.5
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.6e-52 211.8 156 73.1
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.1e-49 202.2 1375 30.6
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 8.2e-46 190.3 589 28.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.6e-44 183.7 267 43.1
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.0e-43 183.3 151 66.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 5.5e-42 177.6 239 46.0
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 6.1e-41 174.1 130 70.8
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-38 165.6 148 56.1
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.4e-34 152.9 254 39.4
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.0e-32 145.2 149 59.7
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.4e-26 123.6 782 27.6
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.2e-24 117.9 425 26.8
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 9.1e-21 107.1 99 57.6
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.2e-18 98.6 283 29.3
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 6.1e-17 94.4 71 66.2
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.0e-15 89.4 573 23.4
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 9.7e-15 87.0 158 36.7
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-14 86.7 211 28.4
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 3.7e-14 85.1 104 43.3
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.7e-11 76.3 124 37.1
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.2e-11 75.9 86 44.2
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.1e-10 73.6 80 50.0


User provided reference genes

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