Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.1e-133 479.9 228 100.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.1e-133 479.9 228 100.0
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 7.6e-108 394.0 221 83.7
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 9.6e-103 377.1 232 77.6
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 2.4e-101 372.5 214 81.3
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 3.1e-101 372.1 224 78.6
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 9.0e-101 370.5 199 84.9
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 2.0e-100 369.4 211 79.1
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 3.9e-96 355.1 213 75.6
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 5.1e-96 354.8 204 78.9
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 5.6e-95 351.3 217 72.8
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 2.1e-94 349.4 216 76.9
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 2.8e-94 349.0 209 77.5
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 4.8e-94 348.2 214 72.0
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.4e-93 346.7 194 80.9
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 3.1e-93 345.5 221 73.8
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 4.0e-93 345.1 204 76.0
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 1.2e-92 343.6 205 75.1
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.5e-92 343.2 207 74.9
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 2.9e-91 339.0 201 75.1
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.8e-91 338.6 201 73.6
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.1e-90 337.0 206 72.8
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.9e-90 336.3 200 74.5
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 2.5e-90 335.9 200 74.5
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 4.2e-90 335.1 201 74.6
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 5.5e-90 334.7 209 71.3
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 1.2e-89 333.6 213 72.8
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 1.2e-89 333.6 211 72.0
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 1.6e-89 333.2 205 73.7
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 2.1e-89 332.8 212 72.2
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 2.1e-89 332.8 211 72.5
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 2.7e-89 332.4 200 74.0
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 7.9e-89 330.9 211 72.5
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 7.9e-89 330.9 209 72.2
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 1.0e-88 330.5 200 75.0
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.8e-88 329.7 211 71.6
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 3.9e-88 328.6 210 71.0
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 5.1e-88 328.2 211 73.0
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 6.7e-88 327.8 211 71.6
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 6.7e-88 327.8 209 70.3
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 1.1e-87 327.0 207 72.9
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.5e-87 325.9 217 67.3
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 2.5e-87 325.9 199 74.4
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 4.3e-87 325.1 218 68.3
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.3e-86 323.6 201 71.1
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 1.3e-86 323.6 205 70.7
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.6e-86 323.2 207 72.5
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 2.1e-86 322.8 201 72.6
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 2.8e-86 322.4 201 70.6
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.7e-86 322.0 213 66.2
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 3.7e-86 322.0 200 71.5
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 3.7e-86 322.0 197 71.1
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 8.2e-86 320.9 204 68.6
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 8.2e-86 320.9 192 75.5
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 1.4e-85 320.1 211 67.3
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 5.3e-85 318.2 200 71.0
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 9.0e-85 317.4 200 71.0
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 1.5e-84 316.6 201 70.6
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 4.5e-84 315.1 196 72.4
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 1.7e-83 313.2 221 65.6
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 4.9e-83 311.6 202 67.8
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 1.1e-82 310.5 201 69.7
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 1.1e-82 310.5 200 69.5
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.9e-82 309.7 239 61.5
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.9e-82 309.7 204 67.6
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 5.5e-82 308.1 206 68.4
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.2e-81 307.0 197 69.5
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.2e-81 307.0 197 70.1
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 3.5e-81 305.4 200 69.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 7.9e-81 304.3 197 69.5
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 3.9e-80 302.0 173 77.5
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 5.1e-80 301.6 200 69.0
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 6.7e-80 301.2 200 68.5
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 8.7e-80 300.8 202 67.8
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 9.7e-79 297.4 173 76.3
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 4.8e-78 295.0 200 67.5
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 3.1e-77 292.4 220 61.8
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.4e-76 288.9 165 76.4
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 7.7e-76 287.7 162 80.9
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 1.4e-74 283.5 228 59.2
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 3.2e-74 282.3 173 73.4
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 2.1e-73 279.6 166 73.5
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 2.7e-73 279.3 166 72.9
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 2.3e-72 276.2 200 65.5
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.7e-67 260.0 201 61.2
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 1.1e-66 257.3 175 65.7
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 9.4e-66 254.2 134 84.3
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 9.4e-66 254.2 161 71.4
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 6.1e-65 251.5 133 85.7
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 2.6e-63 246.1 203 58.1
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 4.8e-62 241.9 158 71.5
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 6.3e-62 241.5 192 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 1.4e-61 240.4 194 57.2
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 2.0e-60 236.5 194 55.7
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.7e-59 233.4 193 53.9
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 2.9e-59 232.6 134 76.1
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 7.2e-50 201.4 125 74.4
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 3.0e-48 196.1 112 75.9
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 9.8e-47 191.0 197 48.2
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.7e-46 189.1 212 46.7
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 2.7e-44 183.0 194 49.0
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.6e-41 173.7 104 71.2
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 9.1e-37 157.9 144 52.8
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.2e-36 157.5 182 40.7
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 4.0e-32 142.5 81 79.0
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 2.2e-30 136.7 91 65.9
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 7.5e-23 111.7 88 58.0
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 1.9e-21 107.1 75 65.3
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.9e-18 97.1 60 75.0
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.6e-17 92.8 55 70.9
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 8.1e-17 91.7 54 75.9
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.4e-16 90.9 53 77.4
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.5e-15 87.4 68 60.3
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 2.4e-13 80.1 54 63.0
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 1.0e-11 74.7 91 46.2
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 1.0e-11 74.7 91 46.2
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 1.0e-11 74.7 91 46.2
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 1.0e-11 74.7 91 46.2
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 3.0e-11 73.2 90 45.6
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 7.3e-10 68.6 67 47.8
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 1.3e-06 57.8 33 69.7
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 6.4e-06 55.5 98 38.8


User provided reference genes

Program Settings