Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012917 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D113485 8.5e-40 166.4 75 100.0
CSS0005626 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 8.5e-16 86.7 97 46.4
CSS0015423 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 2.5e-15 85.1 99 47.5
CSS0031882 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 4.2e-15 84.3 99 47.5
Dinv39726 Davidia involucrata HOM05D000074 ORTHO05D001793 3.7e-11 71.2 101 39.6
Lj1A773G36 Lonicera japonica HOM05D000074 ORTHO05D001793 4.8e-11 70.9 75 48.0
Actinidia09740 Actinidia chinensis HOM05D000074 ORTHO05D001793 1.4e-10 69.3 81 44.4
Dinv08751 Davidia involucrata HOM05D000074 ORTHO05D001793 1.4e-10 69.3 102 41.2
QL08p031824 Quercus lobata HOM05D000074 ORTHO05D001793 9.1e-10 66.6 100 40.0
QL08p032020 Quercus lobata HOM05D000074 ORTHO05D001793 9.1e-10 66.6 100 40.0
Cfa014356 Carpinus fangiana HOM05D000074 ORTHO05D001793 3.5e-09 64.7 100 34.0
Manes.13G069350 Manihot esculenta HOM05D000074 ORTHO05D001793 3.5e-09 64.7 104 38.5
Cfa014345 Carpinus fangiana HOM05D000074 ORTHO05D001793 4.5e-09 64.3 100 39.0
Glyma.12G096900 Glycine max HOM05D000074 ORTHO05D001793 4.5e-09 64.3 95 36.8
Dinv08750 Davidia involucrata HOM05D000074 ORTHO05D001793 5.9e-09 63.9 102 39.2
Glyma.06G307900 Glycine max HOM05D000074 ORTHO05D001793 7.7e-09 63.5 95 36.8
Cfa014348 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.0e-08 63.2 91 36.3
QL08p032090 Quercus lobata HOM05D000074 ORTHO05D037438 1.3e-08 62.8 92 38.0
Cfa014349 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.7e-08 62.4 101 34.7
VMungo1127G0122 Vigna mungo HOM05D000074 ORTHO05D001793 1.7e-08 62.4 98 34.7
Prupe.3G214200 Prunus persica HOM05D000074 ORTHO05D001793 2.2e-08 62.0 95 36.8
CiPaw.04G113600 Carya illinoinensis HOM05D000074 ORTHO05D001793 3.8e-08 61.2 100 37.0
CiPaw.04G113900 Carya illinoinensis HOM05D000074 ORTHO05D001793 3.8e-08 61.2 96 36.5
Haze_12806 Corylus avellana HOM05D000074 ORTHO05D001793 3.8e-08 61.2 100 35.0
Potri.014G155300 Populus trichocarpa HOM05D000074 ORTHO05D001793 3.8e-08 61.2 105 37.1
QL08p032066 Quercus lobata HOM05D000074 ORTHO05D001793 3.8e-08 61.2 92 37.0
Sabra02G0173900 Salix brachista HOM05D000074 ORTHO05D001793 3.8e-08 61.2 103 36.9
vmacro12187 Vaccinium macrocarpon HOM05D000074 ORTHO05D001793 3.8e-08 61.2 99 34.3
Cfa014353 Carpinus fangiana HOM05D000074 ORTHO05D001793 5.0e-08 60.8 100 38.0
Nn1g07221 Nelumbo nucifera HOM05D000074 ORTHO05D001793 5.0e-08 60.8 96 37.5
Cfa014347 Carpinus fangiana HOM05D000074 ORTHO05D001793 6.5e-08 60.5 100 38.0
Lj1A770G42 Lonicera japonica HOM05D000074 ORTHO05D001793 6.5e-08 60.5 102 35.3
Cfa014351 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.1e-07 59.7 100 36.0
MBI18_g45976_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D001793 1.1e-07 59.7 72 40.3
CiPaw.04G114000 Carya illinoinensis HOM05D000074 ORTHO05D001793 1.5e-07 59.3 96 37.5
Potri.002G227300 Populus trichocarpa HOM05D000074 ORTHO05D001793 1.5e-07 59.3 102 35.3
DCAR_012027 Daucus carota HOM05D000074 ORTHO05D001793 1.9e-07 58.9 94 36.2
DCAR_021159 Daucus carota HOM05D000074 ORTHO05D001793 2.5e-07 58.5 91 35.2
Medtr2g087950 Medicago truncatula HOM05D000074 ORTHO05D001793 2.5e-07 58.5 98 35.7
Rhsim06G0164900 Rhododendron simsii HOM05D000074 ORTHO05D001793 3.2e-07 58.2 36 69.4
HanXRQChr04g0127001 Helianthus annuus HOM05D000074 ORTHO05D001793 4.2e-07 57.8 101 33.7
Atru.chr6.3223 Acer truncatum HOM05D000074 ORTHO05D001793 5.5e-07 57.4 113 37.2
Gohir.A11G154600 Gossypium hirsutum HOM05D000074 ORTHO05D001793 5.5e-07 57.4 88 37.5
Duzib133G1449 Durio zibethinus HOM05D000074 ORTHO05D001793 7.2e-07 57.0 105 35.2
HanXRQChr04g0127031 Helianthus annuus HOM05D000074 ORTHO05D001793 7.2e-07 57.0 103 33.0
Nn1g03452 Nelumbo nucifera HOM05D000074 ORTHO05D001793 7.2e-07 57.0 34 73.5
Actinidia25606 Actinidia chinensis HOM05D000074 ORTHO05D001793 9.4e-07 56.6 30 80.0
CiPaw.04G113300 Carya illinoinensis HOM05D000074 ORTHO05D001793 9.4e-07 56.6 97 35.1
Cc00_g09350 Coffea canephora HOM05D000074 ORTHO05D001793 9.4e-07 56.6 93 35.5
HanXRQChr04g0127021 Helianthus annuus HOM05D000074 ORTHO05D001793 9.4e-07 56.6 102 33.3
MBI17_g41354_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D001793 9.4e-07 56.6 103 33.0
Phvul.011G101500 Phaseolus vulgaris HOM05D000074 ORTHO05D001793 9.4e-07 56.6 95 32.6
TPR.G4237 Trifolium pratense HOM05D000074 ORTHO05D001793 9.4e-07 56.6 61 45.9
arahy.Tifrunner.gnm1.ann1.ASAK87 Arachis hypogaea HOM05D000074 ORTHO05D001793 1.6e-06 55.8 32 68.8
Cfa014355 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.6e-06 55.8 102 33.3
CiPaw.04G113800 Carya illinoinensis HOM05D000074 ORTHO05D001793 1.6e-06 55.8 99 31.3
Lj3g0016012 Lotus japonicus HOM05D000074 ORTHO05D001793 1.6e-06 55.8 99 34.3
Rhsim06G0165300 Rhododendron simsii HOM05D000074 ORTHO05D001793 2.1e-06 55.5 34 70.6
RhsimUnG0081900 Rhododendron simsii HOM05D000074 ORTHO05D001793 2.1e-06 55.5 101 34.7
Lj3g0002889 Lotus japonicus HOM05D000074 ORTHO05D001793 2.7e-06 55.1 93 35.5
Thecc.01G176800 Theobroma cacao HOM05D000074 ORTHO05D001793 2.7e-06 55.1 105 33.3
TWI36G0324 Tripterygium wilfordii HOM05D000074 ORTHO05D001793 2.7e-06 55.1 99 34.3
Cfa014352 Carpinus fangiana HOM05D000074 ORTHO05D001793 3.6e-06 54.7 32 68.8
Eucgr.K00778 Eucalyptus grandis HOM05D000074 ORTHO05D001793 3.6e-06 54.7 107 33.6
Lsat_1_v5_gn_7_93561 Lactuca sativa HOM05D000074 ORTHO05D001793 3.6e-06 54.7 96 32.3
Lalb_Chr03g0028601 Lupinus albus HOM05D000074 ORTHO05D001793 3.6e-06 54.7 97 33.0
Medtr4g050000 Medicago truncatula HOM05D000074 ORTHO05D001793 4.7e-06 54.3 29 75.9
Aqoxy1G03399 Aquilegia oxysepala HOM05D000074 ORTHO05D001793 6.1e-06 53.9 35 68.6
CiPaw.04G113700 Carya illinoinensis HOM05D000074 ORTHO05D001793 6.1e-06 53.9 57 49.1
ClCG02G002060 Citrullus lanatus HOM05D000074 ORTHO05D001793 6.1e-06 53.9 58 43.1
MBI17_g00055_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D001793 6.1e-06 53.9 36 66.7
Rhsim06G0164600 Rhododendron simsii HOM05D000074 ORTHO05D001793 6.1e-06 53.9 33 69.7
CsaV3_2G034700 Cucumis sativus L. HOM05D000074 ORTHO05D001793 8.0e-06 53.5 96 28.1
HanXRQChr04g0127011 Helianthus annuus HOM05D000074 ORTHO05D001793 8.0e-06 53.5 104 31.7
HanXRQChr16g0506881 Helianthus annuus HOM05D000074 ORTHO05D001793 8.0e-06 53.5 99 31.3
HanXRQChr16g0506891 Helianthus annuus HOM05D000074 ORTHO05D001793 8.0e-06 53.5 97 33.0
Thecc.01G176900 Theobroma cacao HOM05D000074 ORTHO05D001793 8.0e-06 53.5 102 35.3


User provided reference genes

Program Settings