Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.2e-53 210.7 100 100.0
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-23 111.3 54 96.3
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 7.3e-23 110.5 55 92.7
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.6e-23 110.2 54 94.4
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.3e-22 109.8 54 94.4
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.3e-22 109.8 54 94.4
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.3e-22 109.8 54 94.4
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.3e-22 109.8 57 89.5
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.3e-22 109.8 54 94.4
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.3e-22 109.8 57 89.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.6e-22 109.4 54 92.6
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.6e-22 109.4 52 98.1
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.1e-22 109.0 54 92.6
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.1e-22 109.0 54 92.6
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.8e-22 108.6 54 90.7
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.8e-22 108.6 54 92.6
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.8e-22 108.6 54 92.6
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.6e-22 108.2 54 92.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.8e-22 107.8 54 92.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 4.8e-22 107.8 54 92.6
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 6.2e-22 107.5 52 96.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 6.2e-22 107.5 52 96.2
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 6.2e-22 107.5 52 96.2
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.2e-22 107.5 53 92.5
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 6.2e-22 107.5 53 92.5
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 6.2e-22 107.5 53 92.5
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.2e-22 107.5 53 92.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 6.2e-22 107.5 53 92.5
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.2e-22 107.5 53 92.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 6.2e-22 107.5 53 92.5
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 6.2e-22 107.5 52 96.2
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.2e-22 107.5 52 96.2
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 6.2e-22 107.5 52 96.2
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 87.0
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.2e-22 107.5 54 90.7
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.1e-22 107.1 54 90.7
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.1e-22 107.1 57 87.7
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 8.1e-22 107.1 54 92.6
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-21 106.7 52 94.2
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-21 106.7 52 94.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-21 106.7 52 94.2
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-21 106.7 52 94.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.1e-21 106.7 52 94.2
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.1e-21 106.7 54 90.7
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.1e-21 106.7 54 88.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.1e-21 106.7 54 90.7
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.4e-21 106.3 52 94.2
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.4e-21 106.3 52 94.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.4e-21 106.3 54 88.9
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.8e-21 105.9 54 90.7
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.8e-21 105.9 54 90.7
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 2.4e-21 105.5 54 90.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.4e-21 105.5 54 90.7
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.4e-21 105.5 54 87.0
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.4e-21 105.5 54 90.7
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.4e-21 105.5 54 90.7
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.4e-21 105.5 58 84.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.1e-21 105.1 57 86.0
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 3.1e-21 105.1 54 90.7
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-21 105.1 54 88.9
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 3.1e-21 105.1 51 96.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.0e-21 104.8 54 87.0
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 4.0e-21 104.8 54 88.9
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 5.3e-21 104.4 66 77.3
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 5.3e-21 104.4 54 87.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.3e-21 104.4 54 87.0
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 5.3e-21 104.4 54 87.0
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.3e-21 104.4 54 87.0
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 87.0
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 88.9
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 88.9
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 88.9
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 88.9
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 88.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 88.9
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 6.9e-21 104.0 54 90.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.0e-21 103.6 54 88.9
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.2e-20 103.2 54 88.9
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.2e-20 103.2 54 88.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.2e-20 103.2 54 88.9
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.2e-20 103.2 54 87.0
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.2e-20 103.2 54 87.0
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.2e-20 103.2 54 88.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.5e-20 102.8 54 85.2
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.0e-20 102.4 57 82.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.6e-20 102.1 65 76.9
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.6e-20 102.1 51 92.2
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.6e-20 102.1 52 90.4
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 2.6e-20 102.1 57 80.7
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.8e-20 100.9 54 85.2
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.8e-20 100.9 54 85.2
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.3e-19 99.8 54 81.5
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.7e-19 99.4 54 85.2
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.7e-19 99.4 54 83.3
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.2e-19 99.0 50 90.0
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 2.2e-19 99.0 54 81.5
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.2e-19 99.0 54 83.3
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.9e-19 98.6 54 83.3
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.9e-19 98.6 54 83.3
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 6.4e-19 97.4 54 81.5
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 6.4e-19 97.4 54 85.2
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-18 96.3 54 83.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.4e-18 95.5 54 81.5
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.2e-17 93.2 54 79.6
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.6e-17 91.3 52 80.8
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.9e-15 85.9 49 77.6
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 9.6e-15 83.6 65 63.1
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.8e-14 81.3 41 90.2
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.0e-12 75.9 43 83.7
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 3.4e-12 75.1 52 63.5
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.7e-11 72.8 39 87.2
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 5.5e-10 67.8 38 84.2
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 5.5e-10 67.8 47 70.2
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-07 60.1 33 81.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 3.3e-07 58.5 29 89.7
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.3e-07 58.5 29 89.7
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 3.3e-07 58.5 29 89.7
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.3e-07 58.5 59 42.4
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 6.2e-06 54.3 36 63.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 8.2e-06 53.9 42 59.5


User provided reference genes

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