Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012885 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 1.2e-146 523.1 255 100.0
vmacro21344 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 4.3e-59 232.3 322 47.2
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 9.5e-59 231.1 321 48.0
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 1.4e-57 227.3 322 46.3
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 9.9e-48 194.5 329 39.8
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 1.9e-43 180.3 328 38.1
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 1.9e-43 180.3 326 37.1
Lj4C739G4 Lonicera japonica HOM05D000921 ORTHO05D004782 2.5e-43 179.9 339 39.2
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 4.7e-42 175.6 293 41.3
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 2.0e-40 170.2 327 38.2
HanXRQChr05g0163481 Helianthus annuus HOM05D000921 ORTHO05D004782 2.6e-40 169.9 300 40.7
Aqoxy6G00846 Aquilegia oxysepala HOM05D000921 ORTHO05D004782 3.4e-40 169.5 326 36.2
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 3.4e-40 169.5 301 39.2
MD08G1200600 Malus domestica HOM05D000921 ORTHO05D004782 2.9e-39 166.4 329 37.4
Duzib116G0480 Durio zibethinus HOM05D000921 ORTHO05D004782 5.4e-38 162.2 327 38.2
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 1.2e-37 161.0 327 36.1
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 1.2e-37 161.0 340 35.6
Thecc.08G072600 Theobroma cacao HOM05D000921 ORTHO05D004782 1.6e-37 160.6 322 38.5
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 2.1e-37 160.2 324 35.5
Migut.N02862 Erythranthe guttata HOM05D000921 ORTHO05D004782 6.0e-37 158.7 323 38.1
Lsat_1_v5_gn_6_107401 Lactuca sativa HOM05D000921 ORTHO05D004782 3.0e-36 156.4 316 36.7
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 1.5e-35 154.1 327 36.4
DCAR_019322 Daucus carota HOM05D000921 ORTHO05D004782 9.6e-35 151.4 295 35.9
SGA_v2.0_scaffold28G11888 Striga asiatica HOM05D000921 ORTHO05D004782 1.6e-34 150.6 323 36.5
COL.COLO4_35265 Corchorus olitorius HOM05D000921 ORTHO05D004782 2.8e-34 149.8 341 35.5
Nitab4.5_0000131g0100 Nicotiana tabacum HOM05D000921 ORTHO05D004782 2.8e-34 149.8 308 36.4
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 3.6e-34 149.4 328 36.0
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 3.6e-34 149.4 325 36.9
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 1.1e-33 147.9 325 35.1
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 1.4e-33 147.5 311 37.6
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 1.4e-33 147.5 323 33.7
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 2.4e-33 146.7 268 41.8
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 3.1e-33 146.4 326 35.0
Solyc04g076500.4 Solanum lycopersicum HOM05D000921 ORTHO05D004782 4.0e-33 146.0 326 35.0
MSTRG.24432 Avicennia marina HOM05D000921 ORTHO05D004782 3.4e-32 142.9 324 34.9
Sopen04g030240 Solanum pennellii HOM05D000921 ORTHO05D004782 7.6e-32 141.7 326 34.4
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 1.7e-31 140.6 321 35.2
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.2e-31 140.2 326 34.4
MELO3C003512.2 Cucumis melo HOM05D000921 ORTHO05D004782 2.9e-31 139.8 330 34.5
ClCG11G014650 Citrullus lanatus HOM05D000921 ORTHO05D004782 8.4e-31 138.3 239 39.7
CsaV3_3G048070 Cucumis sativus L. HOM05D000921 ORTHO05D004782 8.4e-31 138.3 331 34.4
ATR0767G173 Amborella trichopoda HOM05D000921 ORTHO05D004782 5.4e-30 135.6 332 32.8
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 5.4e-30 135.6 328 35.1
CAN.G475.8 Capsicum annuum HOM05D000921 ORTHO05D004782 1.2e-29 134.4 282 36.9
Nitab4.5_0002391g0010 Nicotiana tabacum HOM05D000921 ORTHO05D004782 1.2e-29 134.4 334 34.1
Lj1g0023313 Lotus japonicus HOM05D000921 ORTHO05D004782 1.6e-29 134.0 328 33.5
Psat5g049440 Pisum sativum HOM05D000921 ORTHO05D004782 4.6e-29 132.5 327 32.7
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 4.6e-29 132.5 322 34.2
arahy.Tifrunner.gnm1.ann1.YNEA8K Arachis hypogaea HOM05D000921 ORTHO05D004782 1.7e-28 130.6 328 32.6
Cpa.g.sc21.32 Carica papaya HOM05D000921 ORTHO05D004782 1.7e-28 130.6 344 31.4
Lalb_Chr23g0270001 Lupinus albus HOM05D000921 ORTHO05D004782 1.7e-28 130.6 330 34.2
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 5.1e-28 129.0 304 33.9
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 5.1e-28 129.0 304 33.9
Peaxi162Scf00454g00119 Petunia axillaris HOM05D000921 ORTHO05D004782 6.6e-28 128.6 322 33.9
Ca_16011_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004782 8.7e-28 128.3 328 32.6
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.1e-27 127.9 304 33.6
Glyma.04G096100 Glycine max HOM05D000921 ORTHO05D004782 1.5e-27 127.5 329 32.8
Phvul.009G035500 Phaseolus vulgaris HOM05D000921 ORTHO05D004782 1.5e-27 127.5 329 33.4
Hund26819 Selenicereus undatus HOM05D000921 ORTHO05D004782 1.5e-27 127.5 270 36.3
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 2.5e-27 126.7 327 32.1
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 5.6e-27 125.6 329 31.9
TPR.G6323 Trifolium pratense HOM05D000921 ORTHO05D004782 1.3e-26 124.4 328 32.3
Glyma.06G097800 Glycine max HOM05D000921 ORTHO05D004782 2.1e-26 123.6 329 33.7
EL10Ac1g00502 Beta vulgaris HOM05D000921 ORTHO05D004782 6.2e-26 122.1 254 37.0
VMungo1309G2985 Vigna mungo HOM05D000921 ORTHO05D004782 1.1e-25 121.3 328 32.3
Medtr3g100060 Medicago truncatula HOM05D000921 ORTHO05D004782 1.8e-25 120.6 329 32.2
ECA246G1489 Erigeron canadensis HOM05D000921 ORTHO05D004782 2.4e-25 120.2 275 36.0
Gohir.D06G030700 Gossypium hirsutum HOM05D000921 ORTHO05D004782 5.8e-24 115.5 158 46.2
Sed0023880 Sechium edule HOM05D000921 ORTHO05D004782 9.9e-24 114.8 160 43.1
AUR62019100 Chenopodium quinoa HOM05D000921 ORTHO05D004782 2.2e-23 113.6 271 33.9
Cc10_g08460 Coffea canephora HOM05D000921 ORTHO05D004782 2.9e-23 113.2 156 42.3
Gorai.010G033700 Gossypium raimondii HOM05D000921 ORTHO05D004782 2.9e-23 113.2 158 45.6
Os02g0162766 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 8.4e-23 111.7 316 29.7
AUR62014358 Chenopodium quinoa HOM05D000921 ORTHO05D004782 1.4e-22 110.9 271 32.5
Sc06g0003790 Simmondsia chinensis HOM05D000921 ORTHO05D004782 5.4e-22 109.0 326 30.1
HPP92_013154 Vanilla planifolia HOM05D000921 ORTHO05D004782 2.1e-21 107.1 265 30.6
Zm00001eb207540 Zea mays HOM05D000921 ORTHO05D004782 2.1e-21 107.1 270 31.5
Ah.05g171400 Amaranthus hybridus HOM05D000921 ORTHO05D004782 1.0e-20 104.8 297 31.0
CDE02G0144 Ceratophyllum demersum HOM05D000921 ORTHO05D004782 3.1e-17 93.2 115 43.5
unitig_578.g16055 Utricularia gibba HOM05D000921 ORTHO05D004782 5.8e-16 89.0 211 34.6
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.1e-14 84.7 87 51.7
AagrBONN_evm.TU.Sc2ySwM_117.180 Anthoceros agrestis HOM05D000921 ORTHO05D004782 7.1e-14 82.0 308 24.4
Sc07g0005290 Simmondsia chinensis HOM05D000921 ORTHO05D004782 2.8e-10 70.1 98 39.8
Mapoly0001s0542 Marchantia polymorpha HOM05D000921 ORTHO05D004782 3.7e-10 69.7 114 31.6
SEGI_30803 Sequoiadendron giganteum HOM05D000921 ORTHO05D004782 6.3e-10 68.9 110 37.3
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 9.0e-09 65.1 36 83.3
Pp3c20_23460 Physcomitrium patens HOM05D000921 ORTHO05D004782 5.0e-07 59.3 54 48.1


User provided reference genes

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