Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.4e-136 487.6 243 100.0
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.1e-99 367.1 208 90.4
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.3e-93 344.4 220 82.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-89 332.4 253 74.3
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.4e-88 330.1 253 73.9
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.2e-46 188.7 252 52.4
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 6.7e-46 188.3 263 51.0
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.5e-37 160.6 181 55.8
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.4e-35 153.3 245 46.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.0e-33 147.9 178 53.9
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 5.0e-33 145.6 161 57.8
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.9e-32 143.7 163 55.8
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.2e-32 142.9 217 47.0
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 4.2e-32 142.5 161 54.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.2e-32 142.5 209 48.8
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 5.5e-32 142.1 137 60.6
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 7.2e-32 141.7 212 47.2
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 9.4e-32 141.4 96 74.0
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.2e-31 141.0 210 45.7
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.6e-31 139.4 222 43.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.6e-31 139.4 219 44.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.6e-31 139.4 209 45.9
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.1e-31 138.7 200 48.0
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 6.1e-31 138.7 200 48.0
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.1e-31 138.7 175 50.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 8.0e-31 138.3 136 58.1
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 8.0e-31 138.3 213 43.7
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.0e-30 137.9 222 42.8
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.0e-30 137.9 222 42.8
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.4e-30 137.5 168 53.0
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.8e-30 137.1 175 49.7
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.8e-30 137.1 92 76.1
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.8e-30 137.1 175 49.1
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 2.3e-30 136.7 126 62.7
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.3e-30 136.7 160 53.1
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.0e-30 136.0 112 65.2
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 4.0e-30 136.0 210 43.3
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.2e-30 135.6 168 53.0
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 6.8e-30 135.2 194 47.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 8.8e-30 134.8 229 45.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 8.8e-30 134.8 213 44.6
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 8.8e-30 134.8 229 42.8
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 8.8e-30 134.8 207 46.9
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.5e-29 134.0 167 53.3
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.0e-29 133.7 216 44.0
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 2.0e-29 133.7 211 43.6
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 2.0e-29 133.7 213 43.2
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.0e-29 133.7 167 48.5
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.0e-29 133.7 214 45.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.6e-29 133.3 226 43.4
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.6e-29 133.3 195 44.6
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 3.4e-29 132.9 157 53.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.4e-29 132.9 205 44.4
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 3.4e-29 132.9 207 44.9
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.4e-29 132.9 224 44.6
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.4e-29 132.9 193 46.6
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.4e-29 132.9 213 43.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 4.4e-29 132.5 217 44.2
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 4.4e-29 132.5 157 53.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 4.4e-29 132.5 188 46.8
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 5.7e-29 132.1 161 52.8
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 5.7e-29 132.1 120 60.0
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.7e-29 132.1 218 42.7
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 7.5e-29 131.7 161 52.2
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 9.8e-29 131.3 84 75.0
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 9.8e-29 131.3 149 53.0
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 9.8e-29 131.3 214 43.0
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 9.8e-29 131.3 213 43.7
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 9.8e-29 131.3 120 58.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 9.8e-29 131.3 165 50.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.3e-28 131.0 175 47.4
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.3e-28 131.0 210 43.3
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.3e-28 131.0 94 70.2
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.3e-28 131.0 167 51.5
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.3e-28 131.0 218 42.7
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-28 130.6 208 43.8
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-28 130.6 135 59.3
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-28 130.6 171 51.5
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.7e-28 130.6 167 49.7
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.7e-28 130.6 167 49.7
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.7e-28 130.6 167 50.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.7e-28 130.6 243 42.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.7e-28 130.6 192 46.4
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-28 130.2 211 43.1
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-28 130.2 84 83.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.2e-28 130.2 167 50.9
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.2e-28 130.2 221 42.5
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.8e-28 129.8 203 45.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.7e-28 129.4 149 52.3
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 3.7e-28 129.4 160 51.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.7e-28 129.4 177 48.6
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.7e-28 129.4 95 69.5
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.8e-28 129.0 157 50.3
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 4.8e-28 129.0 228 41.7
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.8e-28 129.0 144 54.9
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.8e-28 129.0 211 46.9
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.3e-28 128.6 105 61.9
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 6.3e-28 128.6 214 43.9
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 8.3e-28 128.3 203 43.3
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 8.3e-28 128.3 203 43.3
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 8.3e-28 128.3 199 43.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.1e-27 127.9 157 52.9
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-27 127.5 211 46.4
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 2.4e-27 126.7 202 41.1
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 2.4e-27 126.7 142 54.2
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.4e-27 126.7 167 50.9
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 3.1e-27 126.3 168 49.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 3.1e-27 126.3 157 51.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.1e-27 125.9 167 47.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.1e-27 125.9 225 42.7
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.4e-27 125.6 101 64.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 5.4e-27 125.6 225 42.7
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.2e-26 124.4 160 48.1
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-26 124.4 103 63.1
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.6e-26 124.0 160 47.5
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.6e-26 124.0 161 49.1
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.7e-26 123.2 181 44.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.7e-26 123.2 139 51.1
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 3.5e-26 122.9 157 48.4
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 3.5e-26 122.9 178 44.9
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.5e-26 122.5 199 41.7
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-25 120.9 235 40.4
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.7e-25 120.6 215 41.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.8e-25 119.4 165 46.1
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.6e-25 118.6 156 47.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.3e-24 116.3 134 50.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.5e-24 114.8 236 37.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.2e-23 114.4 153 50.3
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 6.1e-23 112.1 137 52.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 8.0e-23 111.7 91 63.7
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 8.9e-22 108.2 105 57.1
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.2e-21 107.8 85 62.4
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.5e-21 107.5 167 46.1
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.0e-21 107.1 134 50.0
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 4.4e-21 105.9 137 50.4
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 7.5e-21 105.1 91 60.4
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 7.5e-21 105.1 116 55.2
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 9.8e-21 104.8 139 50.4
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.7e-20 104.0 92 59.8
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 6.3e-20 102.1 124 53.2
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 6.3e-20 102.1 149 40.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.8e-19 100.5 64 76.6
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.8e-19 100.5 153 44.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.4e-19 100.1 136 49.3
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.2e-18 97.8 116 52.6
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 2.0e-18 97.1 93 54.8
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 3.5e-18 96.3 118 49.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 5.6e-16 89.0 69 65.2
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 5.6e-16 89.0 130 39.2
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.1e-15 85.5 126 42.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-13 81.3 115 42.6
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-12 77.4 52 80.8
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.7e-09 67.4 193 32.6
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 3.9e-09 66.2 106 41.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 4.3e-08 62.8 32 84.4
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 7.3e-08 62.0 74 39.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.1e-07 60.5 69 52.2
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.1e-06 58.2 104 36.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.8e-06 57.4 33 90.9
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 6.8e-06 55.5 92 39.1


User provided reference genes

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