Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012871 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D043306 2.3e-27 124.8 61 100.0
Oeu020977.1 Olea europaea HOM05D001006 ORTHO05D000868 1.1e-10 69.3 36 83.3
Rhsim03G0262900 Rhododendron simsii HOM05D001006 ORTHO05D000868 2.0e-10 68.6 33 93.9
vmacro06029 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 2.0e-10 68.6 33 93.9
Actinidia17325 Actinidia chinensis HOM05D001006 ORTHO05D000868 3.3e-10 67.8 33 90.9
Actinidia38644 Actinidia chinensis HOM05D001006 ORTHO05D000868 3.3e-10 67.8 33 90.9
MSTRG.6195 Avicennia marina HOM05D001006 ORTHO05D000868 5.7e-10 67.0 33 87.9
Thhalv10025307m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 5.7e-10 67.0 36 80.6
Nitab4.5_0001212g0120 Nicotiana tabacum HOM05D001006 ORTHO05D000868 5.7e-10 67.0 35 82.9
Sabra18G0082200 Salix brachista HOM05D001006 ORTHO05D000868 5.7e-10 67.0 35 85.7
Peaxi162Scf00942g00119 Petunia axillaris HOM05D001006 ORTHO05D000868 7.4e-10 66.6 36 80.6
Atru.chr7.737 Acer truncatum HOM05D001006 ORTHO05D000868 9.7e-10 66.2 33 87.9
Cc06_g13610 Coffea canephora HOM05D001006 ORTHO05D000868 9.7e-10 66.2 37 81.1
CiPaw.07G189300 Carya illinoinensis HOM05D001006 ORTHO05D000868 1.7e-09 65.5 33 87.9
COL.COLO4_19572 Corchorus olitorius HOM05D001006 ORTHO05D000868 1.7e-09 65.5 33 84.8
Potri.018G096035 Populus trichocarpa HOM05D001006 ORTHO05D000868 1.7e-09 65.5 33 87.9
Lsat_1_v5_gn_7_51841 Lactuca sativa HOM05D001006 ORTHO05D000868 2.2e-09 65.1 35 82.9
QL02p096914 Quercus lobata HOM05D001006 ORTHO05D000868 2.8e-09 64.7 33 87.9
TAR625G1224 Trochodendron aralioides HOM05D001006 ORTHO05D000868 2.8e-09 64.7 33 84.8
Solyc07g006690.3 Solanum lycopersicum HOM05D001006 ORTHO05D000868 3.7e-09 64.3 33 81.8
Sopen07g002790 Solanum pennellii HOM05D001006 ORTHO05D000868 3.7e-09 64.3 33 81.8
PGSC0003DMG400027478 Solanum tuberosum HOM05D001006 ORTHO05D000868 3.7e-09 64.3 33 81.8
Cfa013526 Carpinus fangiana HOM05D001006 ORTHO05D000868 4.8e-09 63.9 33 84.8
THA.LOC104811811 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 4.8e-09 63.9 33 81.8
Ciclev10008201m.g Citrus clementina HOM05D001006 ORTHO05D000868 6.3e-09 63.5 33 81.8
Nitab4.5_0000244g0170 Nicotiana tabacum HOM05D001006 ORTHO05D000868 6.3e-09 63.5 33 81.8
PGR102G0578 Punica granatum HOM05D001006 ORTHO05D000868 6.3e-09 63.5 32 87.5
GSVIVG01029120001 Vitis vinifera HOM05D001006 ORTHO05D000868 6.3e-09 63.5 33 81.8
Migut.J01471 Erythranthe guttata HOM05D001006 ORTHO05D000868 8.2e-09 63.2 33 81.8
Hund26376 Selenicereus undatus HOM05D001006 ORTHO05D000868 8.2e-09 63.2 33 81.8
TAR383G0605 Trochodendron aralioides HOM05D001006 ORTHO05D000868 8.2e-09 63.2 33 84.8
Dinv41276 Davidia involucrata HOM05D001006 ORTHO05D000868 1.1e-08 62.8 33 81.8
Manes.06G027200 Manihot esculenta HOM05D001006 ORTHO05D000868 1.1e-08 62.8 56 55.4
TWI34G0927 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 1.1e-08 62.8 33 81.8
Glyma.06G218100 Glycine max HOM05D001006 ORTHO05D000868 1.4e-08 62.4 33 84.8
Lj6g0027805 Lotus japonicus HOM05D001006 ORTHO05D000868 1.4e-08 62.4 33 84.8
SalBow6G0511 Salvia bowleyana HOM05D001006 ORTHO05D000868 1.4e-08 62.4 33 75.8
SalBow6G5585 Salvia bowleyana HOM05D001006 ORTHO05D000868 1.4e-08 62.4 33 75.8
VMungo1309G2043 Vigna mungo HOM05D001006 ORTHO05D000868 1.4e-08 62.4 33 84.8
Aqoxy7G03139 Aquilegia oxysepala HOM05D001006 ORTHO05D000868 1.8e-08 62.0 54 61.1
CAN.G584.22 Capsicum annuum HOM05D001006 ORTHO05D000868 1.8e-08 62.0 31 83.9
Glyma.04G146800 Glycine max HOM05D001006 ORTHO05D000868 1.8e-08 62.0 33 81.8
HanXRQChr03g0069031 Helianthus annuus HOM05D001006 ORTHO05D000868 1.8e-08 62.0 33 84.8
Nn8g40400 Nelumbo nucifera HOM05D001006 ORTHO05D000868 1.8e-08 62.0 33 81.8
Prupe.1G091600 Prunus persica HOM05D001006 ORTHO05D000868 1.8e-08 62.0 33 81.8
RcHm_v2.0_Chr4g0403551 Rosa chinensis HOM05D001006 ORTHO05D000868 1.8e-08 62.0 33 81.8
CANSAT11G2496 Cannabis sativa HOM05D001006 ORTHO05D000868 2.4e-08 61.6 33 81.8
Lj9A689G38 Lonicera japonica HOM05D001006 ORTHO05D000868 2.4e-08 61.6 35 80.0
Medtr4g128800 Medicago truncatula HOM05D001006 ORTHO05D000868 2.4e-08 61.6 36 77.8
Sc18g0003400 Simmondsia chinensis HOM05D001006 ORTHO05D000868 2.4e-08 61.6 33 81.8
Psat0ss9363g0240 Pisum sativum HOM05D001006 ORTHO05D000868 3.1e-08 61.2 33 81.8
ATR0580G012 Amborella trichopoda HOM05D001006 ORTHO05D000868 4.1e-08 60.8 31 87.1
DCAR_017957 Daucus carota HOM05D001006 ORTHO05D000868 4.1e-08 60.8 35 74.3
MD13G1265600 Malus domestica HOM05D001006 ORTHO05D000868 4.1e-08 60.8 33 81.8
PSO063G5901 Papaver somniferum HOM05D001006 ORTHO05D000868 4.1e-08 60.8 32 78.1
Phvul.009G206000 Phaseolus vulgaris HOM05D001006 ORTHO05D000868 4.1e-08 60.8 33 81.8
Sp7g23800 Schrenkiella parvula HOM05D001006 ORTHO05D000868 4.1e-08 60.8 33 78.8
CARHR233220 Cardamine hirsuta HOM05D001006 ORTHO05D000868 5.3e-08 60.5 33 78.8
Dinv43346 Davidia involucrata HOM05D001006 ORTHO05D000868 5.3e-08 60.5 35 74.3
FvH4_4g08890 Fragaria vesca HOM05D001006 ORTHO05D000868 5.3e-08 60.5 33 78.8
FAN12G4171 Fragaria x ananassa HOM05D001006 ORTHO05D000868 5.3e-08 60.5 33 78.8
Hma1.2p1_1493F.1_g286850 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 5.3e-08 60.5 34 76.5
MD16G1266100 Malus domestica HOM05D001006 ORTHO05D000868 5.3e-08 60.5 33 81.8
AL7G27270 Arabidopsis lyrata HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
AT4G25770 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
arahy.Tifrunner.gnm1.ann1.VD4QHY Arachis hypogaea HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 81.8
BcaC09g50746 Brassica carinata HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
BcaNung04115 Brassica carinata HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
A01p17010 Brassica napus HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
BolC1t02056H Brassica oleracea HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
BraA01t01657Z Brassica rapa HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
Carub.0007s1519 Capsella rubella HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 75.8
Duzib168G1112 Durio zibethinus HOM05D001006 ORTHO05D000868 6.9e-08 60.1 33 78.8
ClCG06G013110 Citrullus lanatus HOM05D001006 ORTHO05D000868 9.1e-08 59.7 35 77.1
ECA247G0492 Erigeron canadensis HOM05D001006 ORTHO05D000868 9.1e-08 59.7 35 74.3
Gorai.004G101500 Gossypium raimondii HOM05D001006 ORTHO05D000868 9.1e-08 59.7 32 81.2
Lsat_1_v5_gn_1_321 Lactuca sativa HOM05D001006 ORTHO05D000868 9.1e-08 59.7 41 65.9
C01p21330 Brassica napus HOM05D001006 ORTHO05D000868 1.2e-07 59.3 33 75.8
Thecc.09G167100 Theobroma cacao HOM05D001006 ORTHO05D000868 1.2e-07 59.3 31 83.9
Eucgr.C02420 Eucalyptus grandis HOM05D001006 ORTHO05D000868 1.5e-07 58.9 32 84.4
TPR.G9527 Trifolium pratense HOM05D001006 ORTHO05D000868 1.5e-07 58.9 33 78.8
Lsat_1_v5_gn_9_78940 Lactuca sativa HOM05D001006 ORTHO05D000868 2.0e-07 58.5 33 75.8
MBI16_g05026_MAGBIO Magnolia biondii HOM05D001006 ORTHO05D000868 2.0e-07 58.5 33 78.8
arahy.Tifrunner.gnm1.ann1.CQU168 Arachis hypogaea HOM05D001006 ORTHO05D000868 2.6e-07 58.2 31 83.9
Gohir.1Z049474 Gossypium hirsutum HOM05D001006 ORTHO05D000868 2.6e-07 58.2 31 80.6
Gohir.D08G095800 Gossypium hirsutum HOM05D001006 ORTHO05D000868 2.6e-07 58.2 31 80.6
Os08g0447300 Oryza sativa ssp. japonica HOM05D001006 ORTHO05D000868 2.6e-07 58.2 33 78.8
Psat1g023840 Pisum sativum HOM05D001006 ORTHO05D000868 2.6e-07 58.2 33 75.8
TPR.G5294 Trifolium pratense HOM05D001006 ORTHO05D000868 2.6e-07 58.2 33 75.8
Lj4g0009769 Lotus japonicus HOM05D001006 ORTHO05D000868 3.4e-07 57.8 33 75.8
RcHm_v2.0_Chr6g0306871 Rosa chinensis HOM05D001006 ORTHO05D000868 3.4e-07 57.8 33 72.7
Zm00001eb040870 Zea mays HOM05D001006 ORTHO05D000868 3.4e-07 57.8 33 78.8
HanXRQChr02g0045981 Helianthus annuus HOM05D001006 ORTHO05D000868 4.5e-07 57.4 33 72.7
HanXRQChr05g0136771 Helianthus annuus HOM05D001006 ORTHO05D000868 4.5e-07 57.4 31 83.9
CiPaw.07G201200 Carya illinoinensis HOM05D001006 ORTHO05D000868 5.9e-07 57.0 33 72.7
ECA236G2292 Erigeron canadensis HOM05D001006 ORTHO05D000868 5.9e-07 57.0 33 78.8
Lalb_Chr08g0234501 Lupinus albus HOM05D001006 ORTHO05D000868 5.9e-07 57.0 33 78.8
Sed0026734 Sechium edule HOM05D001006 ORTHO05D000868 5.9e-07 57.0 31 83.9
SEGI_24415 Sequoiadendron giganteum HOM05D001006 ORTHO05D000868 7.7e-07 56.6 33 72.7
HPP92_018336 Vanilla planifolia HOM05D001006 ORTHO05D000868 7.7e-07 56.6 31 83.9
HanXRQChr15g0485471 Helianthus annuus HOM05D001006 ORTHO05D000868 1.0e-06 56.2 33 72.7
QL12p040803 Quercus lobata HOM05D001006 ORTHO05D000868 1.0e-06 56.2 35 62.9
Atru.chr13.904 Acer truncatum HOM05D001006 ORTHO05D000868 1.3e-06 55.8 33 72.7
Cfa013394 Carpinus fangiana HOM05D001006 ORTHO05D000868 1.3e-06 55.8 33 75.8
FvH4_2g35100 Fragaria vesca HOM05D001006 ORTHO05D000868 1.3e-06 55.8 33 69.7
FAN15G1652 Fragaria x ananassa HOM05D001006 ORTHO05D000868 1.3e-06 55.8 33 69.7
FAN20G2370 Fragaria x ananassa HOM05D001006 ORTHO05D000868 1.3e-06 55.8 33 69.7
FAN27G0337 Fragaria x ananassa HOM05D001006 ORTHO05D000868 1.3e-06 55.8 33 69.7
VMungo1309G0383 Vigna mungo HOM05D001006 ORTHO05D000868 1.3e-06 55.8 36 63.9
EL10Ac1g02331 Beta vulgaris HOM05D001006 ORTHO05D000868 1.7e-06 55.5 56 51.8
Nitab4.5_0001614g0150 Nicotiana tabacum HOM05D001006 ORTHO05D000868 1.7e-06 55.5 32 78.1
Nitab4.5_0008009g0010 Nicotiana tabacum HOM05D001006 ORTHO05D000868 1.7e-06 55.5 32 78.1
Ca_15563_v3 Cicer arietinum L. HOM05D001006 ORTHO05D000868 2.2e-06 55.1 33 69.7
Peaxi162Scf00628g00412 Petunia axillaris HOM05D001006 ORTHO05D000868 2.2e-06 55.1 32 71.9
Prupe.1G443100 Prunus persica HOM05D001006 ORTHO05D000868 2.2e-06 55.1 33 72.7
TAR628G1343 Trochodendron aralioides HOM05D001006 ORTHO05D000868 2.2e-06 55.1 31 77.4
Aa31LG1G4860 Aethionema arabicum HOM05D001006 ORTHO05D000868 2.9e-06 54.7 33 69.7
C08p13370 Brassica napus HOM05D001006 ORTHO05D000868 2.9e-06 54.7 35 68.6
BolC8t48967H Brassica oleracea HOM05D001006 ORTHO05D000868 2.9e-06 54.7 35 68.6
MD08G1108500 Malus domestica HOM05D001006 ORTHO05D000868 2.9e-06 54.7 33 69.7
MD15G1089000 Malus domestica HOM05D001006 ORTHO05D000868 2.9e-06 54.7 33 69.7
SMO169G0109 Selaginella moellendorffii HOM05D001006 ORTHO05D000868 2.9e-06 54.7 33 69.7
CANSAT80G1443 Cannabis sativa HOM05D001006 ORTHO05D000868 3.8e-06 54.3 33 63.6
Lalb_Chr11g0072321 Lupinus albus HOM05D001006 ORTHO05D000868 3.8e-06 54.3 31 80.6
QL12p040788 Quercus lobata HOM05D001006 ORTHO05D000868 3.8e-06 54.3 35 60.0
vmacro21397 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 3.8e-06 54.3 32 75.0
ATR0057G050 Amborella trichopoda HOM05D001006 ORTHO05D000868 5.0e-06 53.9 33 63.6
A08p34220 Brassica napus HOM05D001006 ORTHO05D000868 5.0e-06 53.9 35 68.6
BraA08t35334Z Brassica rapa HOM05D001006 ORTHO05D000868 5.0e-06 53.9 35 68.6
ECA232G1594 Erigeron canadensis HOM05D001006 ORTHO05D000868 5.0e-06 53.9 31 77.4
Medtr3g110530 Medicago truncatula HOM05D001006 ORTHO05D000868 5.0e-06 53.9 33 66.7
THA.LOC104825052 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 5.0e-06 53.9 33 66.7
TPR.G12420 Trifolium pratense HOM05D001006 ORTHO05D000868 5.0e-06 53.9 33 66.7
Oeu020465.1 Olea europaea HOM05D001006 ORTHO05D043306 6.5e-06 53.5 33 66.7
Rhsim06G0066800 Rhododendron simsii HOM05D001006 ORTHO05D000868 6.5e-06 53.5 33 69.7
THA.LOC104811540 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 6.5e-06 53.5 33 63.6
GSVIVG01009271001 Vitis vinifera HOM05D001006 ORTHO05D000868 6.5e-06 53.5 33 66.7
Sed0008572 Sechium edule HOM05D001006 ORTHO05D000868 8.5e-06 53.1 33 72.7


User provided reference genes

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