Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.1e-63 245.0 123 100.0
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.2e-56 223.0 141 83.0
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 5.2e-55 217.6 141 80.9
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.2e-54 216.5 118 91.5
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 9.0e-47 190.3 132 77.3
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.9e-41 172.6 118 76.3
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 7.6e-38 160.6 118 75.4
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 7.6e-30 134.0 98 74.5
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 1.3e-24 116.7 99 61.6
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 1.6e-24 116.3 99 60.6
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 3.7e-24 115.2 99 59.6
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 3.7e-24 115.2 99 59.6
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 3.7e-24 115.2 99 59.6
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 3.7e-24 115.2 99 59.6
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 2.5e-17 92.4 118 51.7
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 2.5e-17 92.4 118 51.7
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 5.7e-17 91.3 93 59.1
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 1.3e-16 90.1 82 59.8
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.3e-16 90.1 93 58.1
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.8e-16 89.0 93 58.1
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 3.7e-16 88.6 93 57.0
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 4.8e-16 88.2 93 55.9
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 6.3e-16 87.8 93 53.8
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 8.2e-16 87.4 94 55.3
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 8.2e-16 87.4 94 55.3
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 8.2e-16 87.4 100 53.0
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.1e-15 87.0 82 61.0
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 1.8e-15 86.3 93 54.8
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.4e-15 85.9 82 57.3
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 2.4e-15 85.9 94 53.2
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 2.4e-15 85.9 93 53.8
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 2.4e-15 85.9 93 55.9
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 3.1e-15 85.5 93 54.8
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 3.1e-15 85.5 93 54.8
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 3.1e-15 85.5 93 54.8
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 3.1e-15 85.5 94 52.1
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 3.1e-15 85.5 94 52.1
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 3.1e-15 85.5 94 52.1
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 3.1e-15 85.5 94 54.3
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 4.1e-15 85.1 94 52.1
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 4.1e-15 85.1 92 55.4
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 4.1e-15 85.1 94 53.2
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 4.1e-15 85.1 94 55.3
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 4.1e-15 85.1 94 55.3
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 4.1e-15 85.1 93 54.8
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 4.1e-15 85.1 93 54.8
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 5.3e-15 84.7 94 53.2
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 5.3e-15 84.7 82 56.1
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 5.3e-15 84.7 93 51.6
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 6.9e-15 84.3 94 52.1
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 6.9e-15 84.3 94 51.1
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 9.1e-15 84.0 82 57.3
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 9.1e-15 84.0 94 51.1
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 9.1e-15 84.0 93 52.7
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 9.1e-15 84.0 93 54.8
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 9.1e-15 84.0 93 52.7
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 9.1e-15 84.0 94 51.1
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 1.2e-14 83.6 93 53.8
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 1.2e-14 83.6 93 53.8
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 1.2e-14 83.6 94 53.2
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.2e-14 83.6 96 50.0
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 1.5e-14 83.2 94 54.3
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 1.5e-14 83.2 82 50.0
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 1.5e-14 83.2 82 51.2
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 1.5e-14 83.2 93 50.5
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 2.0e-14 82.8 82 57.3
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 2.0e-14 82.8 93 52.7
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 2.0e-14 82.8 93 52.7
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 2.0e-14 82.8 93 53.8
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 2.6e-14 82.4 94 48.9
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 2.6e-14 82.4 93 50.5
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 3.4e-14 82.0 93 52.7
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 3.4e-14 82.0 93 52.7
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 3.4e-14 82.0 92 53.3
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 3.4e-14 82.0 94 52.1
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 4.5e-14 81.6 82 50.0
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 4.5e-14 81.6 93 51.6
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 4.5e-14 81.6 93 53.8
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.9e-14 81.3 93 51.6
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.9e-14 81.3 93 51.6
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 5.9e-14 81.3 82 53.7
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 5.9e-14 81.3 93 51.6
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 1.0e-13 80.5 94 48.9
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 1.0e-13 80.5 83 53.0
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 1.0e-13 80.5 94 48.9
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 1.0e-13 80.5 94 48.9
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 1.0e-13 80.5 83 53.0
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 1.0e-13 80.5 82 53.7
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 1.0e-13 80.5 82 53.7
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 1.0e-13 80.5 82 52.4
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 1.0e-13 80.5 94 52.1
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 1.3e-13 80.1 93 50.5
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 1.3e-13 80.1 93 49.5
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 1.3e-13 80.1 93 51.6
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 1.3e-13 80.1 98 45.9
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 1.7e-13 79.7 82 53.7
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 1.7e-13 79.7 118 45.8
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.7e-13 79.7 93 49.5
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 2.2e-13 79.3 83 53.0
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 2.9e-13 79.0 93 50.5
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 2.9e-13 79.0 81 55.6
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.8e-13 78.6 82 47.6
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 3.8e-13 78.6 93 50.5
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 3.8e-13 78.6 93 48.4
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 3.8e-13 78.6 93 48.4
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 3.8e-13 78.6 93 49.5
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 5.0e-13 78.2 93 50.5
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 5.0e-13 78.2 93 52.7
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 6.5e-13 77.8 55 67.3
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 6.5e-13 77.8 93 49.5
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 6.5e-13 77.8 93 49.5
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 6.5e-13 77.8 93 49.5
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 6.5e-13 77.8 93 49.5
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 6.5e-13 77.8 93 49.5
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 6.5e-13 77.8 92 51.1
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.1e-12 77.0 93 49.5
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.1e-12 77.0 83 48.2
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 1.4e-12 76.6 82 48.8
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 1.4e-12 76.6 94 50.0
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 1.4e-12 76.6 82 50.0
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 5.5e-12 74.7 82 48.8
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 7.2e-12 74.3 83 50.6
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 1.6e-11 73.2 53 67.9
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 4.7e-11 71.6 83 45.8
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.0e-10 70.5 83 43.4
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 1.8e-10 69.7 82 46.3
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 2.3e-10 69.3 82 47.6
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 2.3e-10 69.3 82 40.2
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 3.9e-10 68.6 83 47.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 5.1e-10 68.2 54 64.8
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 7.4e-09 64.3 82 41.5
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 1.3e-08 63.5 82 39.0
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 1.7e-08 63.2 82 39.0
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 2.2e-08 62.8 82 41.5
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 4.8e-08 61.6 78 41.0
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.1e-07 60.5 94 35.1
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.8e-07 59.7 83 36.1
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 7.0e-07 57.8 84 38.1
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 1.5e-06 56.6 59 47.5
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 5.9e-06 54.7 65 43.1


User provided reference genes

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