Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.3e-217 757.7 378 100.0
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.3e-217 757.7 378 100.0
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 1.6e-190 669.5 382 86.4
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 2.9e-173 612.1 458 71.6
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 2.1e-171 605.9 382 80.4
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 4.7e-171 604.7 379 79.4
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 6.1e-171 604.4 378 80.2
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.0e-170 603.6 382 79.1
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 1.4e-170 603.2 383 79.4
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 1.8e-170 602.8 382 80.4
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 4.0e-170 601.7 389 78.9
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 6.8e-170 600.9 378 77.8
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 2.6e-169 599.0 380 79.2
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 2.6e-169 599.0 379 78.9
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 3.4e-169 598.6 378 77.5
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 4.4e-169 598.2 383 77.0
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 1.7e-168 596.3 383 79.6
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.8e-168 595.5 378 78.6
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 3.7e-168 595.1 379 77.8
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 6.3e-168 594.3 378 78.3
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 6.3e-168 594.3 378 78.3
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 6.3e-168 594.3 383 78.3
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.3e-168 594.0 378 78.3
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.1e-167 593.6 391 76.7
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 4.1e-167 591.7 384 76.6
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.1e-167 591.7 378 78.0
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 1.6e-166 589.7 378 77.5
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 5.9e-166 587.8 382 78.3
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.7e-165 586.3 387 76.0
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 6.6e-165 584.3 382 74.9
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 6.6e-165 584.3 378 77.2
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 8.6e-165 583.9 388 74.7
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 8.6e-165 583.9 379 76.3
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 5.6e-164 581.3 388 75.3
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 5.6e-164 581.3 394 74.4
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.2e-163 580.1 387 75.7
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 1.2e-163 580.1 387 75.2
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 2.8e-163 578.9 383 76.5
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 8.0e-163 577.4 382 75.9
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 8.0e-163 577.4 403 72.7
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 6.8e-162 574.3 385 75.3
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 8.9e-162 573.9 385 75.3
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 8.9e-162 573.9 388 75.3
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.0e-161 572.8 389 74.3
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 3.4e-161 572.0 391 76.5
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 3.4e-161 572.0 396 74.0
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 5.7e-161 571.2 389 74.0
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 7.5e-161 570.9 379 76.0
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.3e-160 570.1 491 64.4
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 2.2e-160 569.3 389 73.8
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.8e-159 566.2 389 73.8
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 5.4e-159 564.7 381 75.6
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 2.0e-158 562.8 388 73.2
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 5.9e-158 561.2 381 74.8
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 1.7e-157 559.7 388 73.7
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 2.3e-157 559.3 390 71.5
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 8.6e-157 557.4 386 73.6
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 1.5e-156 556.6 381 72.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 1.5e-156 556.6 379 74.9
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 1.9e-156 556.2 386 73.6
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 1.9e-156 556.2 299 88.3
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 3.3e-156 555.4 385 74.0
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 3.3e-156 555.4 385 74.0
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 9.5e-156 553.9 362 76.2
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.2e-155 553.5 382 74.1
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 1.2e-155 553.5 431 67.7
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 3.6e-155 552.0 381 73.5
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 6.2e-155 551.2 362 75.7
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 8.0e-155 550.8 368 74.7
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 2.3e-154 549.3 381 73.0
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 5.2e-154 548.1 381 73.0
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 2.0e-153 546.2 378 72.8
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 3.4e-153 545.4 361 77.0
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 7.5e-153 544.3 378 72.2
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 1.3e-152 543.5 390 71.0
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 2.4e-151 539.3 383 69.2
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.5e-148 530.0 421 67.0
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.4e-146 523.5 304 78.9
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 6.8e-146 521.2 380 68.9
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.7e-144 516.5 283 85.5
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.9e-144 515.0 390 67.7
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 1.9e-143 513.1 378 68.0
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.7e-142 509.2 383 69.7
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 6.0e-142 508.1 386 67.4
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 2.5e-140 502.7 388 65.5
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 2.1e-139 499.6 385 65.7
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 2.1e-139 499.6 385 65.5
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 3.6e-139 498.8 378 66.9
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.4e-138 496.9 378 70.6
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.3e-138 496.1 390 66.4
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.0e-137 493.0 384 67.2
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.4e-137 491.9 390 64.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.4e-135 486.1 292 80.1
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 2.7e-134 482.6 397 64.5
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 4.0e-130 468.8 306 72.5
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 2.6e-129 466.1 296 75.0
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 4.8e-123 445.3 352 65.9
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.4e-119 433.7 320 71.2
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 1.1e-108 397.5 228 82.0
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 6.9e-106 388.3 357 56.6
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 4.5e-105 385.6 338 58.0
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 2.5e-103 379.8 332 55.7
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 6.0e-102 375.2 213 82.6
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 6.0e-102 375.2 213 82.6
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 6.0e-102 375.2 213 82.6
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 4.8e-99 365.5 245 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 4.1e-98 362.5 293 57.7
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 3.8e-96 355.9 234 71.4
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 3.0e-93 346.3 213 77.9
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 9.1e-90 334.7 293 61.4
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 1.4e-82 310.8 290 51.0
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 7.4e-76 288.5 311 46.3
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 9.7e-76 288.1 230 63.5
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 9.7e-76 288.1 177 76.8
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 2.4e-74 283.5 287 46.7
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 2.0e-68 263.8 157 83.4
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 8.2e-67 258.5 278 46.0
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 6.8e-61 238.8 135 85.2
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 6.4e-43 179.1 164 60.4
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 2.7e-41 173.7 161 52.2
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.3e-40 171.4 108 72.2
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 3.7e-35 153.3 108 68.5
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.7e-32 144.4 178 50.6
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 1.9e-31 141.0 97 66.0
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 3.7e-27 126.7 87 66.7
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 3.1e-21 107.1 64 73.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-17 94.7 48 87.5
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 1.6e-17 94.7 48 87.5
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 3.8e-11 73.6 104 45.2
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 9.3e-10 68.9 41 78.0


User provided reference genes

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