Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 1.3e-29 132.5 73 100.0
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 6.1e-27 123.6 73 89.0
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 1.0e-26 122.9 73 89.0
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 1.8e-26 122.1 73 89.0
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 5.2e-26 120.6 73 89.0
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 6.8e-26 120.2 73 87.7
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 6.8e-26 120.2 73 89.0
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 8.8e-26 119.8 73 87.7
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 1.2e-25 119.4 73 89.0
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 2.0e-25 118.6 73 84.9
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 2.0e-25 118.6 70 90.0
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.0e-25 118.6 73 87.7
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 2.6e-25 118.2 73 86.3
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.6e-25 118.2 73 86.3
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 5.7e-25 117.1 73 86.3
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 9.8e-25 116.3 70 87.1
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 4.9e-24 114.0 73 86.3
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 6.3e-24 113.6 70 85.7
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 6.3e-24 113.6 73 83.6
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 1.4e-23 112.5 70 85.7
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 2.4e-23 111.7 73 83.6
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 2.4e-23 111.7 73 84.9
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 5.4e-23 110.5 73 83.6
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 1.6e-22 109.0 70 81.4
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 2.0e-22 108.6 77 81.8
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 4.5e-22 107.5 73 82.2
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 4.5e-22 107.5 77 79.2
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 5.9e-22 107.1 77 77.9
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 1.1e-20 102.8 77 76.6
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 1.5e-20 102.4 77 77.9
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.5e-20 102.4 77 79.2
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 3.3e-20 101.3 77 75.3
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 1.2e-19 99.4 77 76.6
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 1.2e-19 99.4 69 81.2
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 4.7e-19 97.4 77 75.3
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 6.1e-19 97.1 70 80.0
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 6.1e-19 97.1 70 80.0
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 6.1e-19 97.1 70 80.0
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 6.1e-19 97.1 77 74.0
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 6.1e-19 97.1 77 71.4
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 1.8e-18 95.5 76 72.4
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 1.8e-18 95.5 77 70.1
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 2.3e-18 95.1 75 72.0
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 2.3e-18 95.1 74 71.6
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 2.3e-18 95.1 74 71.6
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 3.0e-18 94.7 77 76.6
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 3.0e-18 94.7 69 79.7
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 3.0e-18 94.7 69 79.7
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.0e-18 94.7 77 72.7
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.0e-18 94.7 77 72.7
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 4.0e-18 94.4 76 68.4
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 4.0e-18 94.4 73 76.7
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 4.0e-18 94.4 73 75.3
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 4.0e-18 94.4 73 75.3
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 4.0e-18 94.4 77 67.5
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 5.2e-18 94.0 77 75.3
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 5.2e-18 94.0 69 79.7
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 6.8e-18 93.6 57 82.5
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 6.8e-18 93.6 75 69.3
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 6.8e-18 93.6 78 74.4
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 8.9e-18 93.2 75 70.7
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 8.9e-18 93.2 77 76.6
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 1.2e-17 92.8 74 75.7
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.2e-17 92.8 74 75.7
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.2e-17 92.8 74 75.7
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.2e-17 92.8 74 75.7
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 1.2e-17 92.8 68 77.9
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 1.5e-17 92.4 77 71.4
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 2.0e-17 92.0 77 74.0
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 3.4e-17 91.3 73 72.6
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 3.4e-17 91.3 73 74.0
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 3.4e-17 91.3 69 76.8
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 3.4e-17 91.3 73 71.2
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 4.4e-17 90.9 73 68.5
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 4.4e-17 90.9 64 76.6
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 5.7e-17 90.5 77 68.8
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 5.7e-17 90.5 78 70.5
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 7.5e-17 90.1 77 67.5
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 7.5e-17 90.1 76 67.1
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 1.3e-16 89.4 69 73.9
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 1.7e-16 89.0 74 71.6
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 1.7e-16 89.0 74 70.3
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 71.2
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 2.2e-16 88.6 73 67.1
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 2.2e-16 88.6 73 67.1
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 2.8e-16 88.2 74 67.6
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 3.7e-16 87.8 71 70.4
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 4.9e-16 87.4 76 65.8
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 65.8
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 67.1
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 65.8
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 65.8
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 65.8
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 67.1
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 4.9e-16 87.4 73 65.8
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 4.9e-16 87.4 76 71.1
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 8.3e-16 86.7 75 66.7
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 1.1e-15 86.3 71 69.0
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 1.4e-15 85.9 71 64.8
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 1.8e-15 85.5 71 67.6
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 2.4e-15 85.1 73 64.4
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 3.2e-15 84.7 73 67.1
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 3.2e-15 84.7 73 65.8
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 3.2e-15 84.7 73 65.8
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 3.2e-15 84.7 70 68.6
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 4.1e-15 84.3 51 84.3
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 9.2e-15 83.2 73 64.4
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 1.2e-14 82.8 73 68.5
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 1.2e-14 82.8 75 72.0
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 2.0e-14 82.0 64 67.2
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 2.0e-14 82.0 76 68.4
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 2.0e-14 82.0 76 68.4
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 3.5e-14 81.3 75 64.0
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 3.5e-14 81.3 74 64.9
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 3.5e-14 81.3 53 79.2
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 7.8e-14 80.1 69 68.1
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 1.0e-13 79.7 61 72.1
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.0e-13 79.7 75 60.0
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.0e-13 79.7 76 68.4
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 1.7e-13 79.0 76 60.5
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 2.9e-13 78.2 74 64.9
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 3.9e-13 77.8 76 60.5
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 6.6e-13 77.0 69 62.3
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 6.6e-13 77.0 55 72.7
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 1.9e-12 75.5 50 80.0
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 2.1e-11 72.0 50 76.0
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 2.1e-11 72.0 74 67.6
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 8.0e-11 70.1 50 68.0
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 1.8e-10 68.9 72 58.3
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 5.2e-10 67.4 77 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 1.2e-09 66.2 76 53.9
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 2.6e-09 65.1 69 55.1
Sed0001513 Sechium edule HOM05D005517 ORTHO05D006760 1.9e-07 58.9 128 41.4
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 5.4e-07 57.4 73 43.8


User provided reference genes

Program Settings