Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012815 Camellia sinensis var. sinensis HOM05D001808 ORTHO05D033866 4.3e-22 107.1 53 100.0
CSS0030808 Camellia sinensis var. sinensis HOM05D001808 ORTHO05D033866 1.2e-19 99.0 53 92.5
CSS0027408 Camellia sinensis var. sinensis HOM05D053810 ORTHO05D033866 4.2e-17 90.5 47 91.5
FAN08G3030 Fragaria x ananassa HOM05D001808 ORTHO05D001747 3.4e-11 70.9 50 68.0
Dinv09798 Davidia involucrata HOM05D001808 ORTHO05D001747 4.5e-11 70.5 50 66.0
RcHm_v2.0_Chr7g0185361 Rosa chinensis HOM05D001808 ORTHO05D001747 1.3e-10 68.9 50 68.0
FAN04G0848 Fragaria x ananassa HOM05D001808 ORTHO05D001747 1.7e-10 68.6 50 66.0
FvH4_5g12220 Fragaria vesca HOM05D001808 ORTHO05D001747 3.8e-10 67.4 50 64.0
CiPaw.15G130100 Carya illinoinensis HOM05D001808 ORTHO05D001747 4.9e-10 67.0 50 64.0
Duzib084G0243 Durio zibethinus HOM05D001808 ORTHO05D001747 8.4e-10 66.2 50 62.0
MD06G1215700 Malus domestica HOM05D001808 ORTHO05D001747 1.1e-09 65.9 50 64.0
FAN18G2764 Fragaria x ananassa HOM05D001808 ORTHO05D001747 1.9e-09 65.1 50 62.0
QL10p025230 Quercus lobata HOM05D001808 ORTHO05D001747 3.2e-09 64.3 50 62.0
TAR622G1100 Trochodendron aralioides HOM05D001808 ORTHO05D001747 3.2e-09 64.3 50 58.0
Lj5P148T18 Lonicera japonica HOM05D001808 ORTHO05D001747 5.5e-09 63.5 50 58.0
Prupe.5G220900 Prunus persica HOM05D001808 ORTHO05D001747 5.5e-09 63.5 50 62.0
Atru.chr9.836 Acer truncatum HOM05D001808 ORTHO05D001747 7.1e-09 63.2 50 58.0
Nn3g17827 Nelumbo nucifera HOM05D001808 ORTHO05D001747 1.2e-08 62.4 50 58.0
Manes.05G137700 Manihot esculenta HOM05D001808 ORTHO05D001747 1.6e-08 62.0 50 62.0
Thecc.03G034500 Theobroma cacao HOM05D001808 ORTHO05D001747 1.6e-08 62.0 50 64.0
arahy.Tifrunner.gnm1.ann1.FZ18G1 Arachis hypogaea HOM05D001808 ORTHO05D001747 2.7e-08 61.2 50 60.0
arahy.Tifrunner.gnm1.ann1.ZH37XF Arachis hypogaea HOM05D001808 ORTHO05D001747 2.7e-08 61.2 50 58.0
GSVIVG01008279001 Vitis vinifera HOM05D001808 ORTHO05D001747 3.5e-08 60.8 50 58.0
COL.COLO4_05973 Corchorus olitorius HOM05D001808 ORTHO05D001747 4.6e-08 60.5 46 60.9
Glyma.08G041000 Glycine max HOM05D001808 ORTHO05D001747 4.6e-08 60.5 50 58.0
Lj4g0019706 Lotus japonicus HOM05D001808 ORTHO05D001747 1.3e-07 58.9 50 52.0
Phvul.002G316000 Phaseolus vulgaris HOM05D001808 ORTHO05D001747 1.3e-07 58.9 50 56.0
Lalb_Chr05g0222531 Lupinus albus HOM05D001808 ORTHO05D001747 3.9e-07 57.4 49 55.1
Nitab4.5_0000974g0040 Nicotiana tabacum HOM05D001808 ORTHO05D001747 3.9e-07 57.4 50 52.0
Nitab4.5_0009734g0020 Nicotiana tabacum HOM05D001808 ORTHO05D001747 3.9e-07 57.4 52 48.1
CAN.G438.136 Capsicum annuum HOM05D001808 ORTHO05D001747 1.1e-06 55.8 50 50.0
Solyc03g119550.3 Solanum lycopersicum HOM05D001808 ORTHO05D001747 1.1e-06 55.8 50 48.0
Sopen03g038380 Solanum pennellii HOM05D001808 ORTHO05D001747 1.1e-06 55.8 50 48.0
VMungo0251G3693 Vigna mungo HOM05D001808 ORTHO05D001747 1.5e-06 55.5 50 50.0
Peaxi162Scf00015g00937 Petunia axillaris HOM05D001808 ORTHO05D001747 4.3e-06 53.9 50 48.0
TWI81G1032 Tripterygium wilfordii HOM05D001808 ORTHO05D001747 5.6e-06 53.5 50 48.0
ATR0686G175 Amborella trichopoda HOM05D001808 ORTHO05D001747 9.6e-06 52.8 50 50.0
PGSC0003DMG400005632 Solanum tuberosum HOM05D001808 ORTHO05D001747 9.6e-06 52.8 50 46.0


User provided reference genes

Program Settings