Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 0.0e+00 1134.8 715 100.0
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 8.0e-305 1050.0 714 90.9
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.3e-211 739.6 726 68.7
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 3.5e-191 672.5 739 63.7
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 8.5e-190 667.9 703 60.6
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.7e-188 662.9 734 61.2
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.4e-184 649.8 660 65.9
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 2.3e-182 643.3 721 60.5
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 5.0e-182 642.1 726 59.5
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 5.0e-182 642.1 726 59.5
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 3.3e-181 639.4 703 60.2
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 8.9e-179 631.3 703 60.6
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.5e-178 630.6 709 56.4
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 4.4e-178 629.0 716 60.5
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.8e-176 623.6 718 60.2
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.1e-176 622.9 734 60.1
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 9.2e-176 621.3 724 58.6
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 3.5e-175 619.4 724 61.7
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 5.9e-175 618.6 717 57.2
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 7.8e-175 618.2 745 54.0
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.7e-174 617.1 536 65.3
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.3e-174 616.7 747 51.5
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.5e-173 614.0 712 60.1
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 2.5e-173 613.2 745 62.7
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 3.3e-173 612.8 726 62.7
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 5.6e-173 612.1 738 58.5
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 5.6e-173 612.1 730 62.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 4.7e-172 609.0 739 60.8
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.2e-170 604.4 730 59.3
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 7.0e-168 595.1 722 53.6
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 9.2e-168 594.7 719 59.9
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.7e-167 593.2 734 57.4
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 3.5e-167 592.8 744 60.1
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 7.8e-167 591.7 742 56.1
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 3.0e-166 589.7 736 57.2
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.6e-164 583.9 747 52.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-163 580.5 721 54.9
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 3.7e-161 572.8 721 56.6
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.4e-160 570.1 719 57.2
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.9e-157 560.5 694 58.5
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.5e-157 560.1 535 59.8
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 4.3e-157 559.3 733 58.4
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.1e-156 557.0 734 52.6
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 9.9e-154 548.1 741 56.7
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.1e-152 544.7 728 56.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 4.1e-152 542.7 683 52.6
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 3.0e-150 536.6 728 55.2
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.6e-148 529.6 719 49.4
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 8.9e-147 525.0 729 52.3
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 2.6e-146 523.5 668 59.9
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.4e-145 518.5 673 58.4
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.1e-143 513.8 756 53.2
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 8.7e-142 508.4 687 57.1
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 5.6e-141 505.8 683 56.1
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 4.7e-140 502.7 733 54.4
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.1e-139 501.5 691 49.8
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 3.4e-138 496.5 710 55.8
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 2.9e-137 493.4 752 50.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.9e-137 492.7 716 49.0
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 6.4e-137 492.3 746 49.5
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.1e-136 491.5 761 53.0
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.1e-136 488.8 674 57.6
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.9e-133 480.7 690 50.7
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 2.5e-133 480.3 695 56.3
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 7.3e-133 478.8 675 55.0
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 6.2e-132 475.7 729 47.1
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 2.6e-130 470.3 731 50.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 3.4e-130 469.9 701 49.5
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.9e-129 466.8 732 48.8
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 2.9e-129 466.8 718 48.5
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.1e-128 464.9 493 57.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 3.2e-128 463.4 719 48.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 5.4e-128 462.6 517 54.2
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.5e-125 454.5 691 49.8
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 4.3e-125 453.0 515 53.2
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 3.1e-123 446.8 300 78.3
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 9.0e-123 445.3 517 54.2
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 4.5e-122 443.0 739 45.9
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 9.9e-122 441.8 524 53.1
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 7.9e-119 432.2 533 51.2
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.9e-118 429.9 422 61.1
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 6.2e-116 422.5 731 46.1
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 6.2e-116 422.5 730 46.6
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.2e-113 414.1 759 45.7
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 2.5e-112 410.6 782 41.3
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 3.2e-112 410.2 732 47.3
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.3e-110 404.8 729 49.8
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 9.7e-109 398.7 720 46.8
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.8e-108 397.1 523 49.3
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 3.1e-107 393.7 720 46.5
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.9e-104 384.4 658 41.0
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.4e-102 378.3 702 45.7
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 2.5e-101 374.0 726 47.0
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 7.4e-101 372.5 377 60.7
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.4e-99 368.2 697 45.1
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 6.9e-99 365.9 711 47.4
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.0e-97 362.1 706 44.8
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 4.2e-96 356.7 698 42.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 5.5e-96 356.3 527 46.7
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 4.7e-95 353.2 725 45.9
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.4e-94 351.7 494 49.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.5e-90 336.7 535 43.4
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.0e-89 335.5 726 40.4
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.1e-87 326.2 644 40.7
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.4e-85 320.1 442 45.7
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.7e-85 319.7 411 53.0
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.0e-81 308.9 728 40.0
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 6.5e-81 306.2 558 41.8
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 4.0e-78 297.0 236 68.2
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 8.3e-68 262.7 562 34.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.8e-60 237.7 360 54.4
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 6.3e-60 236.5 200 58.5
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 4.1e-59 233.8 689 34.1
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 2.3e-57 228.0 286 55.2
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 7.3e-56 223.0 534 35.4
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.8e-54 218.4 266 55.3
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.4e-53 214.2 196 55.1
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.1e-47 194.9 592 30.4
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 6.4e-44 183.3 257 44.0
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 9.2e-43 179.5 256 49.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.7e-42 177.9 701 28.4
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 6.0e-42 176.8 246 50.0
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.8e-37 160.2 302 38.7
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.3e-36 159.1 220 44.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 4.6e-34 150.6 118 69.5
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.0e-29 135.2 99 73.7
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.6e-26 125.6 164 48.8
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 6.0e-26 123.6 273 38.1
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.7e-25 122.1 111 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.2e-21 109.4 319 33.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.2e-21 109.4 137 51.1
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.3e-20 105.9 99 51.5
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 2.2e-20 105.1 187 40.6
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.0e-18 97.1 217 36.4
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 8.7e-17 93.2 150 40.7
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-16 92.0 106 47.2
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.6e-15 87.8 90 48.9
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.7e-12 79.0 216 38.0
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.1e-10 72.0 104 45.2
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 4.6e-10 70.9 60 56.7
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.0e-09 69.7 48 62.5
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.5e-08 65.9 128 52.3
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 2.5e-08 65.1 87 50.6
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.1e-07 62.0 99 46.5
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.7e-07 61.2 69 46.4
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 4.8e-07 60.8 231 26.8
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 8.1e-07 60.1 50 58.0
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.4e-06 58.5 72 41.7
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.4e-06 58.5 72 41.7
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 3.1e-06 58.2 78 39.7


User provided reference genes

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