Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 4.5e-242 840.9 440 100.0
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 4.5e-242 840.9 440 100.0
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.4e-166 590.1 441 68.3
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 2.5e-147 526.2 488 58.0
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 1.0e-145 520.8 472 59.5
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 1.5e-139 500.4 439 59.5
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 3.9e-137 492.3 437 57.2
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 2.4e-134 483.0 440 56.8
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.3e-127 460.7 437 55.8
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 2.9e-124 449.5 449 54.1
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 3.6e-122 442.6 440 52.7
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 1.7e-116 423.7 437 49.9
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 7.2e-115 418.3 437 51.5
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 1.0e-113 414.5 432 52.3
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 3.4e-112 409.5 440 49.5
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 9.2e-110 401.4 440 48.2
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.6e-109 400.6 431 49.2
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.6e-109 400.6 437 48.7
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 2.7e-109 399.8 485 48.7
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 1.3e-108 397.5 440 48.6
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 2.9e-108 396.4 463 47.1
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 8.6e-108 394.8 438 48.6
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 1.9e-107 393.7 450 48.9
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 3.3e-107 392.9 439 49.7
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 5.6e-107 392.1 438 49.1
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 9.5e-107 391.3 441 46.5
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 9.5e-107 391.3 440 48.0
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.2e-106 391.0 440 47.5
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.8e-106 389.8 438 48.9
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 2.3e-105 386.7 440 47.7
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 3.1e-105 386.3 440 48.0
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 4.0e-105 386.0 440 47.0
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.2e-104 384.4 440 47.0
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 9.8e-104 381.3 461 45.8
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 9.8e-104 381.3 440 46.8
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 9.8e-104 381.3 438 46.1
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 2.9e-103 379.8 439 47.4
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 6.4e-103 378.6 439 48.1
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 6.4e-103 378.6 441 46.9
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 1.9e-102 377.1 434 46.5
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 2.7e-101 373.2 515 42.7
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 8.6e-100 368.2 440 45.0
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 4.7e-98 362.5 437 46.0
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 8.0e-98 361.7 439 46.7
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 8.0e-98 361.7 440 47.0
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 6.8e-97 358.6 438 46.8
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 2.6e-96 356.7 432 50.9
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 9.8e-96 354.8 435 46.9
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 2.2e-95 353.6 442 44.3
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.2e-95 353.6 448 44.6
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.2e-95 353.6 448 44.4
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 2.9e-95 353.2 433 43.6
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 9.2e-94 348.2 448 44.6
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 2.1e-93 347.1 442 44.1
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 2.1e-93 347.1 436 44.7
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 1.3e-92 344.4 435 44.6
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 1.1e-91 341.3 446 42.2
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 1.1e-91 341.3 440 43.4
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 8.1e-90 335.1 433 42.0
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 1.7e-87 327.4 287 56.1
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.9e-87 326.6 432 42.8
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 2.9e-87 326.6 451 40.8
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 4.9e-87 325.9 440 43.4
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.2e-86 323.2 439 42.8
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 3.2e-86 323.2 300 55.0
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 3.2e-86 323.2 443 41.5
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 2.1e-85 320.5 433 42.5
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 3.5e-85 319.7 435 44.1
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 2.5e-83 313.5 436 41.3
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 4.3e-83 312.8 404 44.1
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 4.7e-82 309.3 449 42.8
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 4.0e-81 306.2 411 41.1
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.2e-79 300.4 439 42.1
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 4.9e-79 299.3 332 48.5
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.4e-78 297.7 425 43.8
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 3.5e-77 293.1 439 39.6
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 5.1e-76 289.3 457 38.5
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.5e-75 287.0 425 41.9
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 3.4e-72 276.6 218 61.9
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 1.7e-71 274.2 442 37.8
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.2e-70 270.0 257 53.3
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 1.6e-69 267.7 239 54.8
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.7e-69 266.9 386 39.6
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.9e-67 260.8 383 39.2
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 3.3e-67 260.0 356 42.1
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 1.3e-66 258.1 444 38.1
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 2.8e-66 256.9 441 37.4
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 4.9e-63 246.1 303 45.5
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 8.4e-63 245.4 440 37.0
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 4.6e-61 239.6 416 37.0
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 1.7e-55 221.1 450 36.0
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.7e-55 221.1 473 35.3
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 4.9e-55 219.5 297 41.1
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 1.9e-54 217.6 451 35.7
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 1.9e-54 217.6 280 44.6
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 5.5e-54 216.1 437 34.1
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.6e-53 214.5 452 35.8
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 2.1e-53 214.2 420 32.6
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 7.9e-53 212.2 330 37.0
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 3.0e-52 210.3 166 59.6
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 7.4e-51 205.7 320 40.6
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 1.6e-50 204.5 320 40.6
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 1.6e-50 204.5 299 37.8
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 2.1e-50 204.1 320 40.3
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 3.7e-50 203.4 320 40.3
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 3.7e-50 203.4 292 39.0
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 4.8e-50 203.0 320 40.3
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 6.2e-50 202.6 239 46.9
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.2e-48 198.4 447 34.0
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.2e-48 198.4 293 42.7
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 3.4e-48 196.8 278 42.8
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 1.0e-47 195.3 278 41.4
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 3.2e-46 190.3 284 40.1
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 9.3e-46 188.7 281 40.9
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 6.7e-44 182.6 162 54.9
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-43 181.8 231 42.9
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 1.9e-43 181.0 164 54.9
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 4.3e-43 179.9 303 37.6
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 4.3e-43 179.9 317 33.8
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 9.7e-43 178.7 160 54.4
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 1.4e-41 174.9 234 44.0
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 9.0e-41 172.2 291 34.4
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 9.4e-30 135.6 139 48.9
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-26 124.8 162 40.1
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 1.1e-25 122.1 266 31.2
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 9.1e-25 119.0 170 40.6
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 2.6e-24 117.5 327 27.2
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 4.5e-24 116.7 247 34.4
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.0e-23 115.5 243 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 4.2e-22 110.2 286 28.7
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 8.8e-20 102.4 107 50.5
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 1.1e-19 102.1 346 26.6
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 7.5e-19 99.4 310 28.1
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 2.2e-10 71.2 266 24.4
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 5.5e-06 56.6 59 49.2


User provided reference genes

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