Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012804 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 1.3e-21 105.5 54 100.0
CSS0043820 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 3.1e-20 100.9 54 96.3
CSS0000040 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 5.0e-18 93.6 52 92.3
CSS0048455 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 5.0e-18 93.6 52 92.3
Rhsim11G0048900 Rhododendron simsii HOM05D003095 ORTHO05D003517 8.6e-18 92.8 52 88.5
QL01p053044 Quercus lobata HOM05D003095 ORTHO05D003517 9.5e-17 89.4 52 84.6
QL01p053074 Quercus lobata HOM05D003095 ORTHO05D003517 9.5e-17 89.4 52 84.6
QL10p007071 Quercus lobata HOM05D003095 ORTHO05D003517 9.5e-17 89.4 52 84.6
QL11p043988 Quercus lobata HOM05D003095 ORTHO05D003517 9.5e-17 89.4 52 84.6
vmacro00179 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 1.2e-16 89.0 52 84.6
Dinv42060 Davidia involucrata HOM05D003095 ORTHO05D003517 1.6e-16 88.6 52 84.6
MBI05_g05282_MAGBIO Magnolia biondii HOM05D003095 ORTHO05D003517 1.6e-16 88.6 52 82.7
Dinv23514 Davidia involucrata HOM05D003095 ORTHO05D003517 2.1e-16 88.2 52 84.6
Manes.17G101700 Manihot esculenta HOM05D003095 ORTHO05D003517 2.1e-16 88.2 52 84.6
Prupe.8G096200 Prunus persica HOM05D003095 ORTHO05D003517 2.1e-16 88.2 52 84.6
PGR042G0984 Punica granatum HOM05D003095 ORTHO05D003517 2.8e-16 87.8 52 80.8
Peaxi162Scf00430g00215 Petunia axillaris HOM05D003095 ORTHO05D003517 6.1e-16 86.7 52 80.8
vmacro17487 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 6.1e-16 86.7 52 80.8
CAN.G199.70 Capsicum annuum HOM05D003095 ORTHO05D003517 8.0e-16 86.3 52 80.8
Prupe.8G064900 Prunus persica HOM05D003095 ORTHO05D003517 8.0e-16 86.3 52 82.7
TAR376G0670 Trochodendron aralioides HOM05D003095 ORTHO05D003517 1.0e-15 85.9 50 86.0
Cfa004991 Carpinus fangiana HOM05D003095 ORTHO05D003517 1.4e-15 85.5 52 82.7
Haze_02394 Corylus avellana HOM05D003095 ORTHO05D003517 1.4e-15 85.5 52 82.7
Nn5g29621 Nelumbo nucifera HOM05D003095 ORTHO05D003517 1.4e-15 85.5 52 80.8
Nitab4.5_0011729g0020 Nicotiana tabacum HOM05D003095 ORTHO05D003517 1.8e-15 85.1 52 78.8
Oeu061208.1 Olea europaea HOM05D003095 ORTHO05D003517 1.8e-15 85.1 52 76.9
DCAR_001537 Daucus carota HOM05D003095 ORTHO05D003517 2.3e-15 84.7 50 84.0
Hma1.2p1_0098F.1_g048145 Hydrangea macrophylla HOM05D003095 ORTHO05D003517 2.3e-15 84.7 52 82.7
Nitab4.5_0000308g0180 Nicotiana tabacum HOM05D003095 ORTHO05D003517 2.3e-15 84.7 52 76.9
QL09p041665 Quercus lobata HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 80.8
Solyc01g109680.3 Solanum lycopersicum HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 78.8
Solyc06g150128.1 Solanum lycopersicum HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 80.8
Sopen01g051870 Solanum pennellii HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 78.8
Sopen06g024310 Solanum pennellii HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 80.8
PGSC0003DMG400000729 Solanum tuberosum HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 78.8
PGSC0003DMG400026137 Solanum tuberosum HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 80.8
TWI31G0443 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 3.0e-15 84.3 52 80.8
Actinidia24323 Actinidia chinensis HOM05D003095 ORTHO05D003517 4.0e-15 84.0 52 78.8
Haze_01901 Corylus avellana HOM05D003095 ORTHO05D003517 4.0e-15 84.0 52 80.8
Haze_01902 Corylus avellana HOM05D003095 ORTHO05D003517 4.0e-15 84.0 52 80.8
Nitab4.5_0002503g0080 Nicotiana tabacum HOM05D003095 ORTHO05D003517 4.0e-15 84.0 52 80.8
Nitab4.5_0003811g0120 Nicotiana tabacum HOM05D003095 ORTHO05D003517 4.0e-15 84.0 52 80.8
Oeu055595.1 Olea europaea HOM05D003095 ORTHO05D003517 4.0e-15 84.0 52 78.8
arahy.Tifrunner.gnm1.ann1.7U3W9V Arachis hypogaea HOM05D003095 ORTHO05D003517 5.2e-15 83.6 53 77.4
CAN.G1412.13 Capsicum annuum HOM05D003095 ORTHO05D003517 5.2e-15 83.6 52 75.0
Potri.002G057100 Populus trichocarpa HOM05D003095 ORTHO05D003517 5.2e-15 83.6 52 78.8
Potri.004G155500 Populus trichocarpa HOM05D003095 ORTHO05D003517 5.2e-15 83.6 52 80.8
Cpa.g.sc62.158 Carica papaya HOM05D003095 ORTHO05D003517 6.8e-15 83.2 52 78.8
PGR119G1136 Punica granatum HOM05D003095 ORTHO05D003517 6.8e-15 83.2 52 76.9
CiPaw.05G085100 Carya illinoinensis HOM05D003095 ORTHO05D003517 8.9e-15 82.8 52 78.8
TWI79G1173 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 8.9e-15 82.8 52 78.8
ATR0564G142 Amborella trichopoda HOM05D003095 ORTHO05D003517 1.2e-14 82.4 53 81.1
Atru.chr5.3024 Acer truncatum HOM05D003095 ORTHO05D003517 1.5e-14 82.0 52 76.9
arahy.Tifrunner.gnm1.ann1.RU14FQ Arachis hypogaea HOM05D003095 ORTHO05D003517 1.5e-14 82.0 53 75.5
Peaxi162Scf00016g00073 Petunia axillaris HOM05D003095 ORTHO05D003517 1.5e-14 82.0 52 75.0
GSVIVG01031976001 Vitis vinifera HOM05D003095 ORTHO05D003517 1.5e-14 82.0 52 76.9
Migut.N02616 Erythranthe guttata HOM05D003095 ORTHO05D003517 2.0e-14 81.6 52 78.8
Thecc.01G149400 Theobroma cacao HOM05D003095 ORTHO05D003517 2.0e-14 81.6 52 78.8
CANSAT56G0597 Cannabis sativa HOM05D003095 ORTHO05D003517 2.6e-14 81.3 52 78.8
Eucgr.I01274 Eucalyptus grandis HOM05D003095 ORTHO05D003517 2.6e-14 81.3 52 76.9
Aqoxy5G01623 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 3.4e-14 80.9 52 73.1
DCAR_003668 Daucus carota HOM05D003095 ORTHO05D003517 3.4e-14 80.9 52 75.0
HanXRQChr04g0128031 Helianthus annuus HOM05D003095 ORTHO05D003517 3.4e-14 80.9 53 77.4
Ciclev10029652m.g Citrus clementina HOM05D003095 ORTHO05D003517 4.4e-14 80.5 52 73.1
Duzib264G0230 Durio zibethinus HOM05D003095 ORTHO05D003517 4.4e-14 80.5 52 73.1
Phvul.007G250700 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 4.4e-14 80.5 53 77.4
Eucgr.G01659 Eucalyptus grandis HOM05D003095 ORTHO05D003517 5.7e-14 80.1 52 73.1
Sabra02G0046500 Salix brachista HOM05D003095 ORTHO05D003517 5.7e-14 80.1 52 73.1
SalBow3G4023 Salvia bowleyana HOM05D003095 ORTHO05D003517 5.7e-14 80.1 52 75.0
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 7.5e-14 79.7 52 76.9
Oeu055590.1 Olea europaea HOM05D003095 ORTHO05D003517 7.5e-14 79.7 52 73.1
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 9.8e-14 79.3 53 79.2
Lsat_1_v5_gn_7_91140 Lactuca sativa HOM05D003095 ORTHO05D003517 9.8e-14 79.3 53 75.5
MELO3C023293.2 Cucumis melo HOM05D003095 ORTHO05D003517 1.3e-13 79.0 52 75.0
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 1.3e-13 79.0 52 73.1
Os03g0724500 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 1.3e-13 79.0 54 75.9
Os08g0204632 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 1.3e-13 79.0 54 75.9
SalBow6G1740 Salvia bowleyana HOM05D003095 ORTHO05D003517 1.3e-13 79.0 53 71.7
Lsat_1_v5_gn_5_117800 Lactuca sativa HOM05D003095 ORTHO05D003517 1.7e-13 78.6 52 73.1
Sabra04G0103300 Salix brachista HOM05D003095 ORTHO05D003517 1.7e-13 78.6 52 75.0
Sc20g0006190 Simmondsia chinensis HOM05D003095 ORTHO05D003517 1.7e-13 78.6 52 73.1
Lj4g0025197 Lotus japonicus HOM05D003095 ORTHO05D003517 2.2e-13 78.2 53 77.4
Aqoxy1G01518 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 2.8e-13 77.8 51 76.5
ClCG11G004390 Citrullus lanatus HOM05D003095 ORTHO05D003517 2.8e-13 77.8 52 73.1
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 2.8e-13 77.8 53 75.5
Medtr3g013450 Medicago truncatula HOM05D003095 ORTHO05D003517 2.8e-13 77.8 53 75.5
Cc02_g17490 Coffea canephora HOM05D003095 ORTHO05D003517 3.7e-13 77.4 50 74.0
Zm00001eb055770 Zea mays HOM05D003095 ORTHO05D003517 3.7e-13 77.4 54 75.9
Zm00001eb161730 Zea mays HOM05D003095 ORTHO05D003517 3.7e-13 77.4 55 74.5
AUR62011312 Chenopodium quinoa HOM05D003095 ORTHO05D003517 6.3e-13 76.6 52 73.1
CsaV3_2G014720 Cucumis sativus L. HOM05D003095 ORTHO05D003517 8.3e-13 76.3 52 73.1
LjContig00049g0022514 Lotus japonicus HOM05D003095 ORTHO05D003517 8.3e-13 76.3 53 75.5
Sabra05G0156200 Salix brachista HOM05D003095 ORTHO05D003517 8.3e-13 76.3 52 69.2
unitig_27.g25061 Utricularia gibba HOM05D003095 ORTHO05D003517 8.3e-13 76.3 53 75.5
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 1.8e-12 75.1 52 69.2
ECA236G4459 Erigeron canadensis HOM05D003095 ORTHO05D003517 1.8e-12 75.1 53 73.6
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 1.8e-12 75.1 52 71.2
RcHm_v2.0_Chr4g0435221 Rosa chinensis HOM05D003095 ORTHO05D003517 1.8e-12 75.1 53 75.5
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 2.4e-12 74.7 53 71.7
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 2.4e-12 74.7 53 71.7
Psat5g223200 Pisum sativum HOM05D003095 ORTHO05D003517 2.4e-12 74.7 52 73.1
PSO676G0010 Papaver somniferum HOM05D003095 ORTHO05D003517 3.2e-12 74.3 53 71.7
THA.LOC104804132 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 3.2e-12 74.3 52 73.1
Ca_14242_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 4.1e-12 73.9 53 71.7
FvH4_4g27401 Fragaria vesca HOM05D003095 ORTHO05D003517 4.1e-12 73.9 53 73.6
Sed0008972 Sechium edule HOM05D003095 ORTHO05D003517 4.1e-12 73.9 52 71.2
THA.LOC104824821 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 4.1e-12 73.9 53 71.7
HPP92_014011 Vanilla planifolia HOM05D003095 ORTHO05D003517 4.1e-12 73.9 52 71.2
MD05G1065400 Malus domestica HOM05D003095 ORTHO05D003517 5.4e-12 73.6 52 71.2
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 7.0e-12 73.2 53 69.8
FvH4_2g08920 Fragaria vesca HOM05D003095 ORTHO05D003517 1.2e-11 72.4 53 71.7
FAN20G0734 Fragaria x ananassa HOM05D003095 ORTHO05D003517 1.2e-11 72.4 53 71.7
FAN24G2144 Fragaria x ananassa HOM05D003095 ORTHO05D003517 1.2e-11 72.4 53 71.7
Aa31LG6G16010 Aethionema arabicum HOM05D003095 ORTHO05D003517 1.6e-11 72.0 52 69.2
Ca_09914_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.6e-11 72.0 53 67.9
HanXRQChr10g0306021 Helianthus annuus HOM05D003095 ORTHO05D003517 1.6e-11 72.0 52 71.2
CDE01G0165 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 2.0e-11 71.6 51 66.7
Medtr1g052680 Medicago truncatula HOM05D003095 ORTHO05D003517 2.0e-11 71.6 49 75.5
EL10Ac2g03674 Beta vulgaris HOM05D003095 ORTHO05D003517 2.7e-11 71.2 54 66.7
ECA234G3955 Erigeron canadensis HOM05D003095 ORTHO05D003517 2.7e-11 71.2 52 69.2
FAN15G0555 Fragaria x ananassa HOM05D003095 ORTHO05D003517 2.7e-11 71.2 53 69.8
FAN15G0806 Fragaria x ananassa HOM05D003095 ORTHO05D003517 2.7e-11 71.2 53 69.8
FAN15G1685 Fragaria x ananassa HOM05D003095 ORTHO05D003517 2.7e-11 71.2 53 69.8
Glyma.04G132300 Glycine max HOM05D003095 ORTHO05D003517 2.7e-11 71.2 53 71.7
Hund03256 Selenicereus undatus HOM05D003095 ORTHO05D003517 2.7e-11 71.2 52 69.2
AUR62020660 Chenopodium quinoa HOM05D003095 ORTHO05D003517 3.5e-11 70.9 54 68.5
RcHm_v2.0_Chr6g0264531 Rosa chinensis HOM05D003095 ORTHO05D003517 3.5e-11 70.9 53 69.8
SEGI_39866 Sequoiadendron giganteum HOM05D003095 ORTHO05D003517 3.5e-11 70.9 50 66.0
Sp7g36600 Schrenkiella parvula HOM05D003095 ORTHO05D003517 5.9e-11 70.1 53 69.8
TPR.G39995 Trifolium pratense HOM05D003095 ORTHO05D003517 5.9e-11 70.1 53 67.9
AT4G39235 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 7.8e-11 69.7 53 66.0
BcaNung02347 Brassica carinata HOM05D003095 ORTHO05D003517 7.8e-11 69.7 52 71.2
BcaNung03882 Brassica carinata HOM05D003095 ORTHO05D003517 7.8e-11 69.7 53 67.9
A06p48610 Brassica napus HOM05D003095 ORTHO05D003517 7.8e-11 69.7 54 68.5
C07p63280 Brassica napus HOM05D003095 ORTHO05D003517 7.8e-11 69.7 52 71.2
BraA06t27729Z Brassica rapa HOM05D003095 ORTHO05D003517 7.8e-11 69.7 54 68.5
CDE09G0501 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 7.8e-11 69.7 50 68.0
Thhalv10026620m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 7.8e-11 69.7 53 67.9
Cc08_g00150 Coffea canephora HOM05D003095 ORTHO05D003517 1.0e-10 69.3 52 69.2
Hund06238 Selenicereus undatus HOM05D003095 ORTHO05D003517 1.0e-10 69.3 52 65.4
AL7G11210 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 1.3e-10 68.9 53 66.0
BcaC05g30110 Brassica carinata HOM05D003095 ORTHO05D003517 1.3e-10 68.9 54 66.7
C05p61660 Brassica napus HOM05D003095 ORTHO05D003517 1.3e-10 68.9 54 66.7
BolC5t34824H Brassica oleracea HOM05D003095 ORTHO05D003517 1.3e-10 68.9 54 66.7
BraA05t22960Z Brassica rapa HOM05D003095 ORTHO05D003517 1.3e-10 68.9 54 66.7
Carub.0003s0488 Capsella rubella HOM05D003095 ORTHO05D003517 1.7e-10 68.6 53 66.0
Carub.0007s0115 Capsella rubella HOM05D003095 ORTHO05D003517 1.7e-10 68.6 53 66.0
FAN27G2550 Fragaria x ananassa HOM05D003095 ORTHO05D003517 1.7e-10 68.6 53 69.8
unitig_699.g19197 Utricularia gibba HOM05D003095 ORTHO05D003517 1.7e-10 68.6 52 69.2
MBI04_g00301_MAGBIO Magnolia biondii HOM05D000016 ORTHO05D000109 2.3e-10 68.2 44 72.7
Thhalv10021849m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 2.9e-10 67.8 53 66.0
Gohir.D13G009900 Gossypium hirsutum HOM05D003095 ORTHO05D003517 2.9e-10 67.8 45 73.3
BcaC05g30157 Brassica carinata HOM05D003095 ORTHO05D003517 3.9e-10 67.4 54 64.8
CARHR079980 Cardamine hirsuta HOM05D003095 ORTHO05D003517 3.9e-10 67.4 53 66.0
Gorai.013G010600 Gossypium raimondii HOM05D003095 ORTHO05D003517 3.9e-10 67.4 38 84.2
CARHR247460 Cardamine hirsuta HOM05D003095 ORTHO05D003517 5.0e-10 67.0 53 64.2
Ciclev10023076m.g Citrus clementina HOM05D003095 ORTHO05D003517 5.0e-10 67.0 53 69.8
Potri.005G205500 Populus trichocarpa HOM05D003095 ORTHO05D003517 5.0e-10 67.0 52 69.2
Sp3g04420 Schrenkiella parvula HOM05D003095 ORTHO05D003517 5.0e-10 67.0 53 66.0
AL3G16190 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 6.6e-10 66.6 53 66.0
AT3G05570 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 8.6e-10 66.2 54 64.8
Gohir.A13G009200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 8.6e-10 66.2 45 71.1
Gohir.A13G067200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 8.6e-10 66.2 38 81.6
Gohir.D13G054400 Gossypium hirsutum HOM05D003095 ORTHO05D003517 1.1e-09 65.9 45 73.3
Gorai.013G061200 Gossypium raimondii HOM05D003095 ORTHO05D003517 1.1e-09 65.9 45 73.3
Os10g0557800 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 1.5e-09 65.5 54 63.0
Lalb_Chr19g0128111 Lupinus albus HOM05D003095 ORTHO05D003517 3.3e-09 64.3 53 62.3
Lalb_Chr19g0128121 Lupinus albus HOM05D003095 ORTHO05D003517 3.3e-09 64.3 53 62.3
Phvul.005G018400 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 3.3e-09 64.3 53 62.3
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.6e-08 62.0 45 71.1
Zm00001eb295790 Zea mays HOM05D003095 ORTHO05D003517 3.6e-08 60.8 90 46.7
Zm00001eb016400 Zea mays HOM05D003095 ORTHO05D003517 8.0e-08 59.7 54 59.3
AagrBONN_evm.TU.Sc2ySwM_117.441 Anthoceros agrestis HOM05D003095 ORTHO05D003517 4.0e-07 57.4 50 56.0
AagrBONN_evm.TU.Sc2ySwM_368.860 Anthoceros agrestis HOM05D003095 ORTHO05D003517 4.0e-07 57.4 50 56.0
MD15G1261200 Malus domestica HOM05D003095 ORTHO05D003517 8.9e-07 56.2 51 56.9
Pp3c12_14760 Physcomitrium patens HOM05D003095 ORTHO05D003517 8.9e-07 56.2 48 60.4
AUR62016742 Chenopodium quinoa HOM05D003095 ORTHO05D003517 1.2e-06 55.8 52 59.6
TWI74G0449 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 1.2e-06 55.8 52 57.7
CDE01G0538 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 3.4e-06 54.3 39 61.5
AL4G10840 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 4.4e-06 53.9 56 57.1
AT2G21640 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 4.4e-06 53.9 56 55.4
Prupe.7G155100 Prunus persica HOM05D003095 ORTHO05D003517 4.4e-06 53.9 51 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4473 Anthoceros agrestis HOM05D000309 ORTHO05D000271 7.5e-06 53.1 49 51.0


User provided reference genes

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