Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 2.2e-271 938.3 474 100.0
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 5.2e-236 820.8 476 87.2
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 8.6e-223 776.9 534 75.1
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.1e-217 760.0 476 82.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.1e-207 724.5 474 77.4
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 4.3e-206 721.5 482 75.9
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 4.3e-206 721.5 477 76.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.6e-205 719.5 472 78.8
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 5.3e-204 714.5 392 89.5
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 4.5e-203 711.4 394 89.6
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.3e-202 709.9 476 77.3
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.2e-202 709.1 475 77.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.2e-202 709.1 472 78.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 2.9e-202 708.8 473 77.4
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.9e-202 708.8 476 77.1
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 2.9e-202 708.8 474 76.4
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.4e-201 706.4 473 75.9
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 7.1e-201 704.1 474 76.2
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 7.1e-201 704.1 472 76.7
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.2e-200 703.4 474 76.2
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.6e-200 703.0 392 86.0
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.6e-200 701.4 475 75.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 6.0e-200 701.0 404 86.4
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 6.0e-200 701.0 473 75.7
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-199 700.3 475 74.9
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.3e-199 699.9 387 89.4
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.8e-199 699.5 473 77.2
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 3.0e-199 698.7 473 75.7
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-199 698.4 471 75.8
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 8.7e-199 697.2 479 75.8
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.5e-198 696.4 475 76.2
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.5e-198 696.4 474 75.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 1.9e-198 696.0 475 74.1
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.5e-198 695.7 463 76.2
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 9.6e-198 693.7 472 75.2
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.3e-197 693.3 396 86.4
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 2.8e-197 692.2 475 74.1
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 8.1e-197 690.6 474 75.5
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.4e-196 689.9 474 74.9
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 4.0e-196 688.3 474 75.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 4.0e-196 688.3 477 75.7
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 6.9e-196 687.6 468 75.9
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 9.0e-196 687.2 394 86.5
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.2e-195 686.8 472 74.8
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.2e-195 686.8 394 85.3
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 2.0e-195 686.0 410 82.0
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.6e-195 685.6 473 75.3
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 4.5e-195 684.9 390 87.2
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.5e-195 684.9 477 74.2
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.2e-194 682.6 473 74.2
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 3.8e-194 681.8 475 74.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.8e-194 681.8 473 74.4
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 6.5e-194 681.0 473 74.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 8.4e-194 680.6 409 81.7
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.1e-193 680.2 476 74.4
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.1e-193 680.2 475 73.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.2e-192 676.8 408 81.1
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.6e-192 676.4 385 86.2
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 3.5e-192 675.2 409 80.4
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 4.6e-192 674.9 463 73.4
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 4.6e-192 674.9 393 83.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.3e-191 673.3 462 74.2
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 3.9e-191 671.8 467 73.9
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 8.7e-191 670.6 384 85.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.5e-190 669.8 396 82.6
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 4.3e-190 668.3 463 72.8
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.3e-190 668.3 431 76.8
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 4.3e-190 668.3 405 81.5
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 4.3e-190 668.3 471 72.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 7.4e-190 667.5 465 72.5
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 7.4e-190 667.5 471 72.2
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 9.6e-190 667.2 431 78.0
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.6e-189 666.4 464 72.4
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.6e-189 666.4 431 77.7
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.1e-189 666.0 464 72.2
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.7e-189 665.2 429 76.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.8e-189 664.8 463 72.6
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 4.8e-189 664.8 420 78.1
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 8.2e-189 664.1 464 72.4
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.1e-188 663.7 435 75.9
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.4e-188 663.3 413 78.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.8e-188 662.9 463 73.0
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 4.1e-188 661.8 412 78.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 4.1e-188 661.8 398 80.9
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 5.3e-188 661.4 471 72.8
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 5.3e-188 661.4 419 79.0
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.2e-187 660.2 465 72.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.5e-187 659.8 464 71.6
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.5e-187 659.8 435 75.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.4e-187 658.7 463 72.6
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 5.9e-187 657.9 436 76.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 7.6e-187 657.5 464 71.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.0e-186 657.1 374 84.5
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 3.8e-186 655.2 464 71.3
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.8e-186 655.2 463 71.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 8.5e-186 654.1 404 80.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.5e-185 652.5 382 82.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 3.2e-185 652.1 382 82.2
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 9.3e-185 650.6 383 82.0
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.0e-183 647.1 470 70.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.2e-181 639.4 384 82.3
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.8e-180 636.3 476 70.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 7.2e-177 624.4 418 73.9
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 9.4e-177 624.0 416 73.6
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.7e-176 622.5 435 71.7
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.1e-172 610.5 472 69.1
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 9.4e-161 570.9 473 65.5
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.4e-159 567.0 357 75.1
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.6e-158 562.8 376 75.0
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.2e-155 553.9 412 67.5
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 3.4e-150 535.8 464 62.1
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 9.1e-148 527.7 378 66.9
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 5.5e-145 518.5 353 71.4
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.4e-143 513.8 477 59.3
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 3.0e-143 512.7 345 76.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.0e-138 497.7 373 64.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 3.3e-137 492.7 350 66.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-133 480.7 317 75.7
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.6e-131 472.2 359 64.3
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 7.8e-131 471.5 361 63.4
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 6.2e-128 461.8 276 80.4
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 8.9e-127 458.0 474 55.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 9.8e-126 454.5 289 74.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.9e-124 450.3 306 74.5
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.9e-117 425.6 357 63.6
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 5.6e-113 412.1 307 70.4
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 6.2e-112 408.7 258 77.1
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.1e-111 407.9 288 71.2
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.0e-107 392.1 343 62.7
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.0e-98 364.8 337 62.3
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.3e-98 364.4 211 86.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 8.1e-96 355.1 355 50.7
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.4e-92 343.6 331 50.8
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.2e-91 341.3 218 77.5
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.3e-88 331.3 201 77.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 2.8e-88 330.1 226 76.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.0e-77 295.0 211 69.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.5e-76 289.3 178 80.9
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.3e-69 268.1 250 57.6
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 6.7e-66 255.8 250 56.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 4.5e-62 243.0 124 88.7
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.0e-61 241.9 340 41.8
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 3.6e-59 233.4 136 86.0
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.9e-58 229.9 292 44.2
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-49 201.4 134 75.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.0e-41 174.5 115 80.9
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.6e-41 174.1 168 57.7
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.3e-37 161.8 110 79.1
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.2e-36 156.8 85 84.7
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.6e-35 154.8 112 73.2
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 2.0e-30 137.9 77 90.9
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 4.9e-24 116.7 84 69.0
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 3.1e-23 114.0 123 56.1
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 4.1e-23 113.6 231 35.5
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.8e-18 98.2 60 90.0
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 4.4e-17 93.6 60 86.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 3.7e-16 90.5 68 66.2
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.6e-14 85.1 58 58.6
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 4.6e-14 83.6 50 74.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 6.2e-11 73.2 44 79.5
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.6e-06 58.5 220 25.0
QL09p046950 Quercus lobata HOM05D004538 ORTHO05D337738 2.7e-06 57.8 31 90.3


User provided reference genes

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