Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012755 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 5.5e-49 197.2 92 100.0
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.8e-31 139.0 63 95.2
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 1.6e-27 125.9 63 87.3
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 7.2e-25 117.1 63 77.8
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 1.2e-24 116.3 63 77.8
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 3.6e-24 114.8 63 76.2
Hma1.2p1_0114F.1_g055270 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 4.7e-24 114.4 63 74.6
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 8.0e-24 113.6 63 74.6
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 8.0e-24 113.6 63 74.6
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 8.0e-24 113.6 63 74.6
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 1.0e-23 113.2 72 70.8
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 1.4e-23 112.8 63 74.6
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 1.8e-23 112.5 62 75.8
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 2.3e-23 112.1 63 71.4
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 2.3e-23 112.1 64 73.4
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 2.3e-23 112.1 63 71.4
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 2.3e-23 112.1 63 71.4
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 2.3e-23 112.1 63 74.6
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 3.0e-23 111.7 63 71.4
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 3.0e-23 111.7 63 71.4
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 4.0e-23 111.3 63 74.6
Hma1.2p1_0114F.1_g055240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 4.0e-23 111.3 63 71.4
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 4.0e-23 111.3 63 73.0
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 5.2e-23 110.9 63 71.4
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 5.2e-23 110.9 63 69.8
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 6.8e-23 110.5 63 69.8
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 6.8e-23 110.5 63 73.0
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 6.8e-23 110.5 63 71.4
Lj6C749G7 Lonicera japonica HOM05D003668 ORTHO05D004242 1.2e-22 109.8 74 66.2
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 1.5e-22 109.4 63 71.4
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 2.0e-22 109.0 63 69.8
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 2.0e-22 109.0 63 69.8
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 2.0e-22 109.0 72 66.7
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 3.4e-22 108.2 63 71.4
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 3.4e-22 108.2 63 69.8
Dinv16191 Davidia involucrata HOM05D003668 ORTHO05D004242 3.4e-22 108.2 63 74.6
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 3.4e-22 108.2 63 69.8
CSS0021848 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 4.4e-22 107.8 63 73.0
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 4.4e-22 107.8 70 70.0
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 4.4e-22 107.8 63 68.3
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 4.4e-22 107.8 63 69.8
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 4.4e-22 107.8 63 69.8
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 4.4e-22 107.8 75 62.7
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 4.4e-22 107.8 75 62.7
vmacro01048 Vaccinium macrocarpon HOM05D001299 ORTHO05D004242 4.4e-22 107.8 84 61.9
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 5.7e-22 107.5 63 68.3
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 5.7e-22 107.5 63 71.4
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 5.7e-22 107.5 74 67.6
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 7.5e-22 107.1 62 72.6
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 7.5e-22 107.1 63 69.8
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 9.8e-22 106.7 63 69.8
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 9.8e-22 106.7 63 68.3
RcHm_v2.0_Chr3g0491751 Rosa chinensis HOM05D003668 ORTHO05D004242 9.8e-22 106.7 63 68.3
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 1.3e-21 106.3 63 68.3
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 1.3e-21 106.3 76 60.5
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 1.3e-21 106.3 62 71.0
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 1.3e-21 106.3 63 68.3
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 1.3e-21 106.3 63 69.8
Eucgr.B02885 Eucalyptus grandis HOM05D003668 ORTHO05D004242 2.2e-21 105.5 63 68.3
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 2.8e-21 105.1 63 66.7
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 3.7e-21 104.8 63 69.8
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 3.7e-21 104.8 63 66.7
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 3.7e-21 104.8 63 66.7
Duzib251G0842 Durio zibethinus HOM05D003668 ORTHO05D004242 3.7e-21 104.8 63 73.0
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 4.8e-21 104.4 64 68.8
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 4.8e-21 104.4 62 71.0
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 4.8e-21 104.4 62 71.0
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 4.8e-21 104.4 65 64.6
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 6.3e-21 104.0 63 66.7
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 1.1e-20 103.2 63 65.1
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.1e-20 103.2 63 65.1
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.1e-20 103.2 63 65.1
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.1e-20 103.2 63 65.1
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 1.4e-20 102.8 63 69.8
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 1.8e-20 102.4 61 70.5
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 2.4e-20 102.1 62 66.1
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 2.4e-20 102.1 63 68.3
Hma1.2p1_2887F.1_g329930 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 3.1e-20 101.7 57 71.9
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 3.1e-20 101.7 72 59.7
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 3.1e-20 101.7 63 66.7
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 3.1e-20 101.7 63 65.1
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 3.1e-20 101.7 63 66.7
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 4.1e-20 101.3 76 56.6
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 4.1e-20 101.3 64 65.6
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 4.1e-20 101.3 63 65.1
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 4.1e-20 101.3 63 65.1
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 4.1e-20 101.3 63 68.3
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 5.4e-20 100.9 63 66.7
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 5.4e-20 100.9 63 66.7
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 7.0e-20 100.5 63 66.7
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 7.0e-20 100.5 62 67.7
COL.COLO4_20445 Corchorus olitorius HOM05D003668 ORTHO05D004242 7.0e-20 100.5 64 67.2
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 7.0e-20 100.5 63 65.1
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 9.1e-20 100.1 63 65.1
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 9.1e-20 100.1 63 65.1
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 9.1e-20 100.1 63 68.3
Nitab4.5_0000414g0090 Nicotiana tabacum HOM05D003668 ORTHO05D004242 9.1e-20 100.1 60 70.0
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 9.1e-20 100.1 63 65.1
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 1.2e-19 99.8 64 64.1
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.2e-19 99.8 62 66.1
SHI16328 Sapria himalayana HOM05D003668 ORTHO05D004242 1.2e-19 99.8 59 69.5
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 1.6e-19 99.4 73 58.9
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.6e-19 99.4 63 68.3
unitig_27.g25262 Utricularia gibba HOM05D003668 ORTHO05D004242 1.6e-19 99.4 63 65.1
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 2.0e-19 99.0 63 66.7
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.0e-19 99.0 63 68.3
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 2.0e-19 99.0 63 68.3
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 2.7e-19 98.6 63 63.5
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 2.7e-19 98.6 73 57.5
BraA09t41536Z Brassica rapa HOM05D003668 ORTHO05D004242 2.7e-19 98.6 67 59.7
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.7e-19 98.6 63 61.9
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 4.5e-19 97.8 73 56.2
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 4.5e-19 97.8 63 61.9
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 4.5e-19 97.8 63 63.5
Psat0s3028g0080 Pisum sativum HOM05D003668 ORTHO05D004242 5.9e-19 97.4 65 61.5
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 5.9e-19 97.4 62 67.7
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 7.7e-19 97.1 62 64.5
Glyma.20G135000 Glycine max HOM05D003668 ORTHO05D004242 1.0e-18 96.7 61 65.6
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.0e-18 96.7 63 68.3
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 1.0e-18 96.7 63 68.3
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 1.0e-18 96.7 63 60.3
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.3e-18 96.3 63 66.7
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 1.3e-18 96.3 63 63.5
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 1.7e-18 95.9 73 57.5
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 2.2e-18 95.5 61 63.9
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 2.2e-18 95.5 61 63.9
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 2.2e-18 95.5 61 63.9
CARHR143800 Cardamine hirsuta HOM05D003668 ORTHO05D004242 2.2e-18 95.5 65 64.6
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 2.2e-18 95.5 61 65.6
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 2.9e-18 95.1 61 63.9
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 5.0e-18 94.4 63 63.5
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 6.5e-18 94.0 63 61.9
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 8.5e-18 93.6 63 61.9
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 8.5e-18 93.6 63 63.5
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 1.1e-17 93.2 63 66.7
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 1.5e-17 92.8 63 65.1
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 1.9e-17 92.4 61 62.3
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 2.5e-17 92.0 61 62.3
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 3.2e-17 91.7 63 66.7
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 3.2e-17 91.7 63 66.7
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 5.5e-17 90.9 63 55.6
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 7.2e-17 90.5 65 61.5
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 7.2e-17 90.5 63 63.5
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 3.6e-16 88.2 63 57.1
QL01p002329 Quercus lobata HOM05D000125 ORTHO05D000120 6.1e-16 87.4 59 64.4
SEGI_01615 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 1.8e-15 85.9 65 52.3
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 6.8e-15 84.0 62 54.8
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 4.9e-13 77.8 76 50.0
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 4.9e-13 77.8 61 54.1
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 1.4e-12 76.3 63 55.6
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 2.4e-12 75.5 63 55.6
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 4.1e-12 74.7 63 55.6
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 1.5e-09 66.2 62 45.2
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 1.5e-09 66.2 36 69.4
ECA233G5938 Erigeron canadensis HOM05D003668 ORTHO05D004242 2.1e-08 62.4 44 56.8
Os05g0552500 Oryza sativa ssp. japonica HOM05D003668 ORTHO05D004242 6.1e-08 60.8 41 51.2
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 2.0e-06 55.8 65 40.0


User provided reference genes

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