Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.9e-83 311.2 160 100.0
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.8e-40 169.5 134 72.4
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 5.2e-39 165.2 136 71.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.0e-34 149.4 134 66.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 6.6e-34 148.3 128 67.2
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 8.6e-34 147.9 152 61.2
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.1e-33 147.5 131 67.2
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.6e-32 142.5 146 61.6
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.6e-32 142.5 146 61.6
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.2e-30 137.5 135 60.0
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.9e-28 130.2 135 63.0
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 5.4e-28 128.6 132 59.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 3.0e-26 122.9 144 55.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.3e-25 119.4 135 56.3
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.2e-24 117.5 135 56.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.6e-24 115.9 133 55.6
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.2e-24 115.2 146 52.7
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.2e-22 110.9 150 48.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.5e-22 110.5 135 52.6
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.8e-22 108.6 139 52.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.8e-22 108.6 147 47.6
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 4.9e-21 105.5 108 56.5
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 8.3e-21 104.8 138 51.4
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.2e-20 102.8 115 59.1
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.2e-20 102.8 137 52.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.7e-19 99.8 129 50.4
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 3.5e-19 99.4 136 50.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 3.5e-19 99.4 138 49.3
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.5e-19 99.4 134 50.0
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 4.6e-19 99.0 134 49.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.6e-19 99.0 134 49.3
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.6e-19 99.0 134 50.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.6e-19 99.0 137 53.3
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.6e-19 99.0 134 50.0
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-18 97.4 134 49.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 3.0e-18 96.3 154 44.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 3.0e-18 96.3 101 58.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.9e-18 95.9 136 49.3
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.3e-17 92.4 125 52.8
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 5.6e-17 92.0 135 48.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.6e-17 92.0 136 49.3
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.1e-16 90.1 135 48.9
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 6.2e-16 88.6 135 49.6
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 8.1e-16 88.2 138 52.2
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 8.1e-16 88.2 104 58.7
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 8.1e-16 88.2 160 42.5
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.1e-15 87.8 134 44.0
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.1e-15 87.8 135 45.9
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.4e-15 87.4 133 45.9
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.4e-15 87.4 134 45.5
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.1e-15 86.3 137 48.9
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.0e-15 85.9 131 46.6
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.0e-15 85.9 106 53.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.8e-15 85.1 135 45.2
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 6.8e-15 85.1 154 43.5
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 6.8e-15 85.1 144 48.6
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 8.9e-15 84.7 135 46.7
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.2e-14 84.3 136 46.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.2e-14 84.3 135 44.4
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.5e-14 84.0 135 43.7
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.5e-14 84.0 136 45.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.4e-14 82.8 135 45.9
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.4e-14 82.4 137 46.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.8e-14 82.0 89 56.2
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 7.6e-14 81.6 137 43.8
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-13 80.9 89 56.2
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-13 80.9 133 43.6
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.2e-13 80.1 89 56.2
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 2.9e-13 79.7 104 49.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-13 79.3 135 45.2
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.9e-13 79.0 138 45.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.9e-13 79.0 130 43.1
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 6.4e-13 78.6 145 44.1
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 6.4e-13 78.6 134 46.3
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.9e-12 77.0 104 49.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.9e-12 77.0 141 44.0
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.9e-12 77.0 105 46.7
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.4e-12 76.6 135 45.2
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.2e-12 76.3 136 44.9
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.2e-12 75.9 98 54.1
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 5.4e-12 75.5 136 45.6
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.1e-12 75.1 135 44.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.1e-11 73.6 110 50.0
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.7e-11 73.2 136 46.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.0e-11 72.0 139 44.6
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.0e-10 71.2 138 43.5
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.7e-10 70.5 135 43.0
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.7e-10 70.5 135 43.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.3e-10 70.1 137 43.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 3.0e-10 69.7 136 44.1
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.0e-10 69.7 109 45.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.0e-10 69.7 136 44.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.9e-10 69.3 140 42.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 3.9e-10 69.3 135 42.2
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 6.6e-10 68.6 135 43.7
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 6.6e-10 68.6 81 54.3
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.6e-10 68.6 129 43.4
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 8.7e-10 68.2 135 40.0
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.5e-09 67.4 135 42.2
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.5e-09 67.4 103 49.5
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.9e-09 67.0 138 39.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.5e-09 66.6 133 41.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 4.3e-09 65.9 132 42.4
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 7.3e-09 65.1 115 40.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 9.6e-09 64.7 132 39.4
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.1e-08 63.5 104 48.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.2e-08 62.0 135 38.5
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.0e-07 59.3 125 43.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.0e-07 59.3 136 36.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.0e-07 59.3 136 38.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 4.0e-07 59.3 133 38.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 6.9e-07 58.5 146 41.1
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.0e-06 57.0 140 37.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.4e-06 55.8 125 40.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 9.9e-06 54.7 135 38.5


User provided reference genes

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