Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012744 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 2.3e-96 355.5 177 100.0
CSS0010177 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 8.9e-80 300.4 191 79.6
CSS0026650 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 1.4e-77 293.1 192 78.6
Actinidia35314 Actinidia chinensis HOM05D001540 ORTHO05D001520 7.8e-52 207.6 192 60.4
RhsimUnG0253300 Rhododendron simsii HOM05D001540 ORTHO05D001520 1.1e-48 197.2 191 57.1
vmacro09748 Vaccinium macrocarpon HOM05D001540 ORTHO05D001520 7.6e-47 191.0 193 59.6
Duzib268G1066 Durio zibethinus HOM05D001540 ORTHO05D001520 2.1e-44 183.0 192 56.2
QL08p013554 Quercus lobata HOM05D001540 ORTHO05D001520 2.1e-44 183.0 191 56.5
COL.COLO4_09563 Corchorus olitorius HOM05D001540 ORTHO05D001520 4.6e-44 181.8 192 56.8
Hma1.2p1_0538F.1_g174370 Hydrangea macrophylla HOM05D001540 ORTHO05D001520 1.0e-43 180.6 192 54.2
Potri.001G417000 Populus trichocarpa HOM05D001540 ORTHO05D001520 3.3e-42 175.6 192 54.7
QL08p013394 Quercus lobata HOM05D001540 ORTHO05D001520 5.6e-42 174.9 191 55.0
Duzib213G0680 Durio zibethinus HOM05D001540 ORTHO05D001520 8.1e-41 171.0 192 54.2
Prupe.4G201900 Prunus persica HOM05D001540 ORTHO05D001520 1.4e-40 170.2 192 50.5
Ciclev10007389m.g Citrus clementina HOM05D001540 ORTHO05D001520 5.8e-39 164.9 192 51.6
GSVIVG01014601001 Vitis vinifera HOM05D001540 ORTHO05D001520 5.8e-39 164.9 192 54.2
Sabra16G0283400 Salix brachista HOM05D001540 ORTHO05D001520 1.3e-38 163.7 193 51.8
Dinv03937 Davidia involucrata HOM05D001540 ORTHO05D001520 4.2e-37 158.7 147 61.9
Thecc.07G054500 Theobroma cacao HOM05D001540 ORTHO05D001520 4.2e-37 158.7 192 51.0
Sabra11G0119500 Salix brachista HOM05D001540 ORTHO05D001520 7.1e-37 157.9 191 49.7
Atru.chr2.3205 Acer truncatum HOM05D001540 ORTHO05D001520 4.6e-36 155.2 192 50.5
CiPaw.11G183400 Carya illinoinensis HOM05D001540 ORTHO05D001520 7.9e-36 154.5 191 49.2
Lj1C863G20 Lonicera japonica HOM05D001540 ORTHO05D001520 2.3e-35 152.9 187 50.8
RcHm_v2.0_Chr5g0037241 Rosa chinensis HOM05D001540 ORTHO05D001520 3.6e-33 145.6 193 47.7
CANSAT11G2547 Cannabis sativa HOM05D001540 ORTHO05D001520 6.2e-33 144.8 191 47.1
MD11G1227300 Malus domestica HOM05D001540 ORTHO05D001520 8.1e-33 144.4 191 47.6
Potri.011G132700 Populus trichocarpa HOM05D001540 ORTHO05D001520 8.1e-33 144.4 222 44.1
FvH4_3g21770 Fragaria vesca HOM05D001540 ORTHO05D001520 9.0e-32 141.0 194 47.4
FAN11G3615 Fragaria x ananassa HOM05D001540 ORTHO05D001520 9.0e-32 141.0 194 47.4
Cc05_g13210 Coffea canephora HOM05D001540 ORTHO05D001520 4.5e-31 138.7 189 45.5
TAR624G0744 Trochodendron aralioides HOM05D001540 ORTHO05D001520 4.5e-31 138.7 172 48.3
Manes.15G076800 Manihot esculenta HOM05D001540 ORTHO05D001520 7.6e-31 137.9 187 45.5
Gohir.A11G280400 Gossypium hirsutum HOM05D001540 ORTHO05D001520 1.7e-30 136.7 190 46.8
Gohir.D11G290700 Gossypium hirsutum HOM05D001540 ORTHO05D001520 2.9e-30 136.0 192 45.8
MD03G1212200 Malus domestica HOM05D001540 ORTHO05D001520 2.9e-30 136.0 192 45.3
TAR626G1457 Trochodendron aralioides HOM05D001540 ORTHO05D001520 2.9e-30 136.0 189 44.4
FAN16G2991 Fragaria x ananassa HOM05D001540 ORTHO05D001520 4.9e-30 135.2 194 46.4
FAN25G3568 Fragaria x ananassa HOM05D001540 ORTHO05D001520 4.9e-30 135.2 194 46.4
Gorai.007G314600 Gossypium raimondii HOM05D001540 ORTHO05D001520 1.9e-29 133.3 190 45.8
MBI02_g18407_MAGBIO Magnolia biondii HOM05D001540 ORTHO05D001520 9.3e-29 131.0 151 47.7
FAN21G0746 Fragaria x ananassa HOM05D001540 ORTHO05D001520 1.2e-28 130.6 194 45.9
Manes.03G122700 Manihot esculenta HOM05D001540 ORTHO05D001520 1.6e-28 130.2 188 45.2
TWI38G1832 Tripterygium wilfordii HOM05D001540 ORTHO05D001520 1.6e-28 130.2 186 43.5
Gohir.A01G074300 Gossypium hirsutum HOM05D001540 ORTHO05D001520 4.6e-28 128.6 132 53.8
Cpa.g.sc97.73 Carica papaya HOM05D001540 ORTHO05D001520 2.5e-26 122.9 191 42.4
Gorai.002G082200 Gossypium raimondii HOM05D001540 ORTHO05D001520 3.3e-26 122.5 132 52.3
TWI39G1140 Tripterygium wilfordii HOM05D001540 ORTHO05D001520 7.4e-26 121.3 187 43.9
Gohir.D01G060800 Gossypium hirsutum HOM05D001540 ORTHO05D001520 1.3e-25 120.6 132 51.5
Oeu013855.1 Olea europaea HOM05D001540 ORTHO05D001520 1.4e-24 117.1 155 45.2
Nn1g03665 Nelumbo nucifera HOM05D001540 ORTHO05D001520 2.6e-23 112.8 187 41.2
Ca_01755_v3 Cicer arietinum L. HOM05D001540 ORTHO05D001520 3.8e-22 109.0 192 39.6
Medtr2g082770 Medicago truncatula HOM05D001540 ORTHO05D001520 4.9e-22 108.6 195 39.5
TPR.G36798 Trifolium pratense HOM05D001540 ORTHO05D001520 4.9e-22 108.6 188 39.9
Lalb_Chr19g0134731 Lupinus albus HOM05D001540 ORTHO05D001520 1.1e-21 107.5 194 40.2
Psat5g249880 Pisum sativum HOM05D001540 ORTHO05D001520 5.5e-21 105.1 192 38.0
Glyma.13G287000 Glycine max HOM05D001540 ORTHO05D001520 9.3e-21 104.4 174 39.7
Aqoxy4G02087 Aquilegia oxysepala HOM05D001540 ORTHO05D001520 1.6e-20 103.6 192 39.1
Phvul.011G140900 Phaseolus vulgaris HOM05D001540 ORTHO05D001520 4.6e-20 102.1 193 37.8
arahy.Tifrunner.gnm1.ann1.U6HGF1 Arachis hypogaea HOM05D001540 ORTHO05D001520 6.0e-20 101.7 174 40.2
MSTRG.12955 Avicennia marina HOM05D001540 ORTHO05D001520 1.0e-19 100.9 151 39.1
arahy.Tifrunner.gnm1.ann1.C2FWCT Arachis hypogaea HOM05D001540 ORTHO05D001520 2.3e-19 99.8 174 39.7
Lalb_Chr14g0366091 Lupinus albus HOM05D001540 ORTHO05D001520 2.3e-19 99.8 191 37.7
Glyma.12G214600 Glycine max HOM05D001540 ORTHO05D001520 1.1e-18 97.4 183 38.8
Glyma.12G136000 Glycine max HOM05D001540 ORTHO05D001520 4.3e-18 95.5 194 37.6
Oeu062620.4 Olea europaea HOM05D001540 ORTHO05D001520 3.7e-17 92.4 193 38.3
Nn1g06996 Nelumbo nucifera HOM05D001540 ORTHO05D001520 2.4e-16 89.7 110 50.9
CsaV3_3G022880 Cucumis sativus L. HOM05D001540 ORTHO05D001520 5.3e-16 88.6 191 38.2
Eucgr.F03423 Eucalyptus grandis HOM05D001540 ORTHO05D001520 5.3e-16 88.6 191 37.7
MBI18_g24130_MAGBIO Magnolia biondii HOM05D001540 ORTHO05D001520 9.0e-16 87.8 203 35.0
MSTRG.15168 Avicennia marina HOM05D001540 ORTHO05D001520 2.0e-15 86.7 149 36.2
Lalb_Chr22g0357051 Lupinus albus HOM05D001540 ORTHO05D001520 5.8e-15 85.1 159 39.6
Oeu042914.1 Olea europaea HOM05D001540 ORTHO05D001520 1.0e-14 84.3 193 36.8
Sed0020701 Sechium edule HOM05D001540 ORTHO05D001520 1.3e-14 84.0 191 41.4
Nitab4.5_0002238g0080 Nicotiana tabacum HOM05D001540 ORTHO05D001520 2.2e-14 83.2 192 33.9
CAN.G337.152 Capsicum annuum HOM05D001540 ORTHO05D001520 3.8e-14 82.4 193 34.2
PSO675G0598 Papaver somniferum HOM05D001540 ORTHO05D001520 6.5e-14 81.6 194 34.0
ClCG05G014790 Citrullus lanatus HOM05D001540 ORTHO05D001520 1.1e-13 80.9 188 36.7
Haze_27762 Corylus avellana HOM05D001540 ORTHO05D001520 1.9e-13 80.1 85 54.1
Nitab4.5_0000092g0040 Nicotiana tabacum HOM05D001540 ORTHO05D001520 1.9e-13 80.1 164 34.8
Peaxi162Scf01086g00110 Petunia axillaris HOM05D001540 ORTHO05D001520 2.5e-13 79.7 192 33.9
MELO3C018126.2 Cucumis melo HOM05D001540 ORTHO05D001520 3.2e-13 79.3 191 36.1
EL10Ac4g07983 Beta vulgaris HOM05D001540 ORTHO05D001520 5.5e-13 78.6 168 38.1
VMungo1080G1382 Vigna mungo HOM05D001540 ORTHO05D001520 9.3e-13 77.8 156 36.5
DCAR_022522 Daucus carota HOM05D001540 ORTHO05D001520 2.7e-12 76.3 188 32.4
PGSC0003DMG400019227 Solanum tuberosum HOM05D001540 ORTHO05D001520 3.5e-12 75.9 189 32.8
Solyc07g064060.3 Solanum lycopersicum HOM05D001540 ORTHO05D001520 6.1e-12 75.1 188 31.9
VMungo1127G1627 Vigna mungo HOM05D001540 ORTHO05D001520 6.1e-12 75.1 174 33.9
Os01g0786900 Oryza sativa ssp. japonica HOM05D001540 ORTHO05D001520 7.9e-12 74.7 172 33.7
Sopen07g032200 Solanum pennellii HOM05D001540 ORTHO05D001520 1.0e-11 74.3 188 30.9
PSO541G0622 Papaver somniferum HOM05D001540 ORTHO05D001520 1.3e-11 73.9 194 32.0
AUR62029232 Chenopodium quinoa HOM05D001540 ORTHO05D001520 1.8e-11 73.6 170 34.7
ECA246G1276 Erigeron canadensis HOM05D001540 ORTHO05D001520 2.3e-11 73.2 206 32.0
SalBow7G2055 Salvia bowleyana HOM05D001540 ORTHO05D001520 3.9e-11 72.4 193 34.2
Haze_09606 Corylus avellana HOM05D001540 ORTHO05D001520 5.1e-11 72.0 69 55.1
Zm00001eb151200 Zea mays HOM05D001540 ORTHO05D001520 5.1e-11 72.0 174 31.6
AUR62015639 Chenopodium quinoa HOM05D001540 ORTHO05D001520 8.7e-11 71.2 161 37.3
Lj8A165T111 Lonicera japonica HOM05D001540 ORTHO05D001520 1.5e-10 70.5 70 52.9
Lj3g0015626 Lotus japonicus HOM05D001540 ORTHO05D001520 1.5e-10 70.5 165 32.7
Nitab4.5_0000749g0010 Nicotiana tabacum HOM05D001540 ORTHO05D001520 1.5e-10 70.5 157 34.4
CiPaw.12G126300 Carya illinoinensis HOM05D001540 ORTHO05D001520 1.9e-10 70.1 69 50.7
PGR031G2196 Punica granatum HOM05D001540 ORTHO05D001520 3.3e-10 69.3 188 35.1
CsaV3_UNG229010 Cucumis sativus L. HOM05D001540 ORTHO05D001520 5.7e-10 68.6 179 35.8
Nitab4.5_0000397g0080 Nicotiana tabacum HOM05D001540 ORTHO05D001520 2.2e-09 66.6 170 31.2
HanXRQChr08g0233951 Helianthus annuus HOM05D001540 ORTHO05D001520 8.2e-09 64.7 180 32.2
Ca_01760_v3 Cicer arietinum L. HOM05D001540 ORTHO05D001520 1.5e-07 60.5 76 40.8
PGSC0003DMG400025620 Solanum tuberosum HOM05D001540 ORTHO05D001520 2.6e-07 59.7 179 30.2
HanXRQChr05g0159231 Helianthus annuus HOM05D001540 ORTHO05D001520 7.7e-07 58.2 47 48.9
Sed0016223 Sechium edule HOM05D001540 ORTHO05D001520 3.8e-06 55.8 203 32.5


User provided reference genes

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