Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.9e-130 469.2 228 100.0
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.7e-94 348.6 256 68.8
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.9e-90 336.3 241 70.5
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.2e-90 335.1 254 67.7
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.5e-89 332.0 257 66.9
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.3e-86 323.6 267 64.4
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 2.1e-86 322.8 257 62.6
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 8.4e-83 310.8 267 59.2
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.0e-80 303.9 258 57.8
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 6.7e-80 301.2 254 57.1
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 5.7e-79 298.1 255 59.6
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 5.7e-79 298.1 258 57.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.4e-77 293.5 258 59.3
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 1.8e-77 293.1 253 57.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 4.1e-77 292.0 254 55.9
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 2.0e-76 289.7 257 55.6
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.2e-75 286.2 256 55.9
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 2.9e-75 285.8 258 55.8
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 3.8e-75 285.4 257 54.9
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 6.5e-75 284.6 256 55.9
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 6.5e-75 284.6 258 54.7
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 8.5e-75 284.3 254 57.9
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 8.5e-75 284.3 247 58.7
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.9e-74 283.1 257 55.6
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.2e-74 282.0 256 55.1
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 5.5e-74 281.6 257 55.3
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 2.7e-73 279.3 259 53.3
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 3.6e-73 278.9 255 55.3
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 7.9e-73 277.7 258 54.3
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 7.9e-73 277.7 250 55.2
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 7.9e-73 277.7 223 60.1
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 3.0e-72 275.8 258 53.9
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 3.0e-72 275.8 254 53.5
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 3.9e-72 275.4 254 53.5
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 5.1e-72 275.0 248 53.2
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 5.1e-72 275.0 250 53.6
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 5.1e-72 275.0 241 56.0
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 6.7e-72 274.6 264 52.7
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 6.7e-72 274.6 254 53.1
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 8.8e-72 274.2 259 52.1
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.5e-71 273.5 250 54.0
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 2.0e-71 273.1 259 53.7
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.5e-71 272.7 249 51.8
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 3.3e-71 272.3 250 54.0
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.3e-70 270.4 250 53.2
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.7e-70 270.0 249 50.6
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 2.2e-70 269.6 259 51.4
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 3.7e-70 268.9 250 52.8
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 6.3e-70 268.1 254 52.8
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 8.2e-70 267.7 260 51.5
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.4e-69 266.9 248 53.6
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.4e-69 266.9 251 52.2
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.8e-69 266.5 233 56.2
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.8e-69 266.5 289 49.8
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.8e-69 266.5 247 52.6
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.8e-69 266.5 259 51.0
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.4e-69 266.2 260 50.0
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 2.4e-69 266.2 257 51.8
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 3.1e-69 265.8 260 51.9
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.1e-69 265.4 259 52.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 6.9e-69 264.6 258 53.1
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.1e-69 264.2 258 54.7
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 9.1e-69 264.2 247 52.6
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.2e-68 263.8 243 53.5
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.2e-68 263.8 235 54.0
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.5e-68 263.5 258 54.7
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 2.0e-68 263.1 257 51.4
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 2.0e-68 263.1 244 52.5
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 3.4e-68 262.3 245 53.5
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 3.4e-68 262.3 247 51.8
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 5.9e-68 261.5 258 54.3
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 7.7e-68 261.2 259 52.5
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.3e-67 260.4 244 52.0
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.3e-67 260.4 258 54.3
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 1.3e-67 260.4 241 52.7
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 1.7e-67 260.0 248 52.4
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 1.7e-67 260.0 248 52.4
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 2.2e-67 259.6 256 52.0
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.9e-67 259.2 256 50.8
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 2.9e-67 259.2 254 51.6
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 3.8e-67 258.8 244 51.6
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 6.5e-67 258.1 250 50.8
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 6.5e-67 258.1 257 48.6
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.5e-67 257.7 252 54.0
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.1e-66 257.3 255 50.2
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.1e-66 257.3 259 49.4
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.1e-66 257.3 254 51.2
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.1e-66 257.3 286 49.0
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 3.2e-66 255.8 254 51.2
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.2e-66 255.4 256 50.8
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 5.5e-66 255.0 253 50.2
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 7.2e-66 254.6 254 50.4
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.2e-65 253.8 253 49.8
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 2.1e-65 253.1 258 49.2
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 2.7e-65 252.7 261 50.2
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 3.6e-65 252.3 254 50.0
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 4.7e-65 251.9 252 51.6
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 6.1e-65 251.5 253 49.4
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 6.1e-65 251.5 273 49.8
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.4e-64 250.4 256 48.4
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 3.0e-64 249.2 253 49.0
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 3.9e-64 248.8 304 44.7
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 6.7e-64 248.1 250 49.2
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.3e-63 245.7 242 50.4
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.3e-63 245.7 247 49.8
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.3e-63 245.7 247 49.8
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 9.7e-63 244.2 230 52.2
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 2.8e-62 242.7 250 50.0
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 5.3e-61 238.4 278 46.8
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.0e-60 236.5 245 52.7
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 4.7e-57 225.3 244 50.4
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 3.0e-56 222.6 142 74.6
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 3.1e-53 212.6 225 49.3
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 4.1e-53 212.2 155 61.3
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.0e-52 209.9 192 52.6
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 3.5e-52 209.1 149 63.8
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.3e-51 207.2 149 63.1
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.2e-49 200.7 217 47.5
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 8.8e-48 194.5 246 41.1
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.6e-47 193.0 138 63.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 2.2e-46 189.9 247 40.9
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.4e-45 187.2 150 57.3
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.8e-45 186.8 188 48.9
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.1e-45 186.0 251 41.8
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 2.7e-44 183.0 180 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.3e-40 169.9 226 40.3
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.3e-40 169.9 226 37.6
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.2e-36 157.5 213 42.3
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.6e-36 157.1 181 43.6
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 2.7e-36 156.4 86 79.1
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 2.8e-33 146.4 196 39.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.4e-32 144.1 170 42.9
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 8.9e-32 141.4 198 39.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.5e-31 140.6 247 35.6
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.0e-31 140.2 160 51.9
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-28 130.2 102 61.8
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 3.1e-24 116.3 90 56.7
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 2.0e-23 113.6 132 45.5
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.4e-23 112.8 206 33.0
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 3.2e-21 106.3 162 38.3
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 4.6e-20 102.4 126 43.7
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.3e-14 84.3 56 66.1
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 4.1e-13 79.3 46 71.7
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 2.1e-09 67.0 68 48.5
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 6.2e-09 65.5 36 75.0
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 5.8e-07 58.9 36 72.2


User provided reference genes

Program Settings