Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 8.7e-154 547.0 283 100.0
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.9e-137 492.7 283 91.2
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.6e-123 446.4 286 82.5
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.1e-122 441.4 296 77.4
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.0e-121 439.5 249 86.3
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 9.7e-121 437.2 249 85.9
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.7e-120 436.4 286 81.1
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.9e-118 427.9 285 81.1
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.9e-118 427.9 285 81.1
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 3.0e-114 415.6 250 78.4
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.2e-114 414.8 234 83.8
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 8.8e-114 414.1 252 79.8
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.6e-113 412.5 245 81.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 3.7e-112 408.7 250 80.4
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.8e-111 406.4 250 76.8
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.8e-111 406.4 226 83.2
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.8e-111 406.4 221 86.4
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 4.1e-111 405.2 250 76.4
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 9.1e-111 404.1 259 75.7
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.6e-110 402.5 252 75.8
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 4.5e-110 401.7 247 78.1
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.9e-110 401.4 246 77.2
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.3e-109 400.2 238 77.3
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 2.2e-109 399.4 269 72.1
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 3.8e-109 398.7 261 70.9
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 8.5e-109 397.5 242 76.9
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.5e-108 396.7 282 68.8
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.5e-108 396.0 284 68.7
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.2e-108 395.6 253 75.5
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.2e-108 395.2 284 68.3
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 5.5e-108 394.8 229 79.9
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 5.5e-108 394.8 227 83.3
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 7.2e-108 394.4 264 74.6
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.2e-107 393.7 253 75.1
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.6e-107 393.3 253 73.5
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.4e-106 390.2 221 81.9
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-106 390.2 289 65.7
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.8e-106 389.8 248 75.4
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.8e-106 389.8 246 74.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.3e-106 389.4 286 67.1
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 5.2e-106 388.3 231 77.5
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 8.8e-106 387.5 287 66.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.5e-105 386.7 238 78.2
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.0e-105 386.3 261 72.8
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 3.3e-105 385.6 220 81.8
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 4.4e-105 385.2 251 74.5
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.5e-105 384.4 261 69.3
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 8.2e-104 380.9 230 78.7
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.1e-103 380.6 229 77.3
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-103 380.2 255 69.8
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 3.1e-103 379.0 231 76.6
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 4.1e-103 378.6 263 70.0
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 4.1e-103 378.6 220 79.1
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 7.0e-103 377.9 264 70.1
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 9.1e-103 377.5 247 75.3
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 9.1e-103 377.5 256 73.4
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.0e-102 376.3 239 74.5
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 3.5e-102 375.6 229 77.3
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 4.5e-102 375.2 261 67.8
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.7e-102 374.4 254 68.9
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.0e-101 374.0 284 65.8
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.3e-101 373.6 284 66.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.8e-101 372.1 234 74.8
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 8.5e-101 370.9 237 74.3
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 8.5e-101 370.9 227 77.1
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.9e-100 369.8 230 77.0
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.5e-100 368.2 243 74.1
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.1e-99 366.3 230 74.8
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.7e-99 365.9 278 69.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 6.1e-99 364.8 247 71.3
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 6.1e-99 364.8 238 71.4
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.8e-98 363.2 283 63.6
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 2.3e-98 362.8 240 70.4
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 4.0e-98 362.1 288 62.8
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 6.8e-98 361.3 228 74.6
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.2e-97 360.5 230 73.9
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.5e-97 360.1 244 70.5
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 2.6e-97 359.4 286 63.6
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 3.4e-97 359.0 248 69.4
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 4.4e-97 358.6 243 70.4
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 9.8e-97 357.5 242 69.4
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.2e-96 356.3 229 72.5
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.2e-96 356.3 285 63.5
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.8e-96 355.9 238 71.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 6.3e-96 354.8 291 62.2
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 8.3e-96 354.4 229 72.9
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.9e-93 345.9 231 72.3
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.2e-91 340.5 245 64.9
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 6.1e-91 338.2 245 68.6
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.3e-88 330.5 182 86.3
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.8e-87 326.6 201 75.1
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.4e-87 326.2 264 63.3
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 4.1e-87 325.5 227 68.7
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 4.5e-86 322.0 253 62.8
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 5.9e-86 321.6 240 67.5
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.3e-85 320.5 230 67.8
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.7e-85 320.1 221 71.0
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.3e-85 319.7 201 72.1
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 4.3e-84 315.5 196 75.0
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.2e-83 313.9 183 80.9
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 8.0e-83 311.2 241 64.7
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 4.0e-82 308.9 238 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.1e-79 300.8 242 60.3
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.4e-79 300.4 272 56.6
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 3.2e-79 299.3 272 56.6
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 3.2e-79 299.3 174 80.5
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 3.2e-79 299.3 183 77.0
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.1e-79 298.9 221 63.3
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 2.0e-78 296.6 243 57.6
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.1e-74 282.7 241 62.7
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 4.0e-74 282.3 227 58.6
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 8.9e-74 281.2 179 73.7
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 2.7e-70 269.6 163 77.3
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 2.6e-65 253.1 193 65.3
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.5e-60 236.5 230 53.0
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.0e-57 226.9 278 50.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 7.3e-52 208.4 308 39.3
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 9.6e-52 208.0 116 86.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 4.0e-50 202.6 127 73.2
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 5.2e-50 202.2 265 41.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 8.4e-48 194.9 134 67.9
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.5e-46 189.5 286 39.5
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.5e-44 183.3 113 78.8
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.1e-42 176.4 127 69.3
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.8e-33 145.6 77 90.9
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.1e-31 141.4 78 88.5
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 3.2e-31 139.8 115 57.4
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 1.2e-30 137.9 130 57.7
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 5.6e-28 129.0 72 77.8
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.6e-27 127.5 313 29.1
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 2.7e-22 110.2 76 67.1
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.3e-19 101.3 76 65.8
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 6.7e-13 79.0 56 58.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 2.0e-12 77.4 74 52.7


User provided reference genes

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