Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012725 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 7.6e-233 810.1 393 100.0
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 2.0e-209 732.3 378 95.0
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 5.9e-193 677.6 411 83.7
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 1.4e-72 277.7 417 44.6
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 1.4e-40 171.4 318 36.8
Rhsim04G0208100 Rhododendron simsii HOM05D013111 ORTHO05D013046 4.0e-32 143.3 353 35.1
vmacro10470 Vaccinium macrocarpon HOM05D013111 ORTHO05D013046 2.9e-30 137.1 388 31.2
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 7.8e-28 129.0 303 32.3
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 1.0e-27 128.6 401 30.7
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 6.6e-27 125.9 303 32.3
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 7.3e-26 122.5 287 35.5
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.3e-25 121.7 302 30.8
QL02p072942 Quercus lobata HOM05D025100 ORTHO05D010877 1.3e-25 121.7 347 30.0
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.3e-25 121.7 270 33.3
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 2.1e-25 120.9 289 33.6
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.3e-22 111.7 238 34.9
Dinv33461 Davidia involucrata HOM05D010628 ORTHO05D010877 1.3e-22 111.7 263 33.5
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.7e-22 111.3 296 31.4
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 1.1e-21 108.6 252 32.5
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.4e-21 107.5 287 31.0
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 3.2e-21 107.1 264 36.0
vmacro22846 Vaccinium macrocarpon HOM05D013111 ORTHO05D013046 7.1e-21 105.9 300 28.3
QL10p008459 Quercus lobata HOM05D013052 ORTHO05D012831 6.0e-20 102.8 348 29.6
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.9e-19 100.1 279 28.3
QL01p000349 Quercus lobata HOM05D013052 ORTHO05D012831 8.7e-19 99.0 358 29.9
Dinv25051 Davidia involucrata HOM05D011324 ORTHO05D013448 1.1e-18 98.6 266 28.2
CSS0043929 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 1.9e-18 97.8 214 32.2
QL11p045102 Quercus lobata HOM05D010066 ORTHO05D009743 4.3e-18 96.7 269 29.7
QL05p053761 Quercus lobata HOM05D010066 ORTHO05D016816 9.6e-18 95.5 376 23.4
CSS0033232 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 1.6e-17 94.7 246 32.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-17 94.7 311 29.9
Hund00487 Selenicereus undatus HOM05D064078 ORTHO05D012831 2.1e-17 94.4 246 31.3
Duzib264G0155 Durio zibethinus HOM05D029922 ORTHO05D035097 4.8e-17 93.2 293 28.0
Rhsim04G0224100 Rhododendron simsii HOM05D013111 ORTHO05D013046 8.1e-17 92.4 190 37.4
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 8.1e-17 92.4 332 30.1
Dinv28167 Davidia involucrata HOM05D011324 ORTHO05D013448 1.1e-16 92.0 267 27.7
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 1.8e-16 91.3 219 30.1
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.8e-16 91.3 311 30.2
Duzib264G0667 Durio zibethinus HOM05D029922 ORTHO05D035097 2.4e-16 90.9 293 27.3
Duzib264G0671 Durio zibethinus HOM05D029922 ORTHO05D035097 4.0e-16 90.1 293 27.3
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 5.3e-16 89.7 318 26.1
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 9.0e-16 89.0 245 27.8
QL11p050245 Quercus lobata HOM05D010066 ORTHO05D009743 9.0e-16 89.0 278 28.4
QL93p0284_0002 Quercus lobata HOM05D010066 ORTHO05D009743 9.0e-16 89.0 278 28.4
vmacro20887 Vaccinium macrocarpon HOM05D013111 ORTHO05D013046 1.2e-15 88.6 235 31.1
Rhsim10G0208600 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.5e-15 88.2 240 27.5
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 2.6e-15 87.4 290 27.6
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 3.4e-15 87.0 245 27.8
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 4.5e-15 86.7 252 28.6
QL10p008435 Quercus lobata HOM05D013052 ORTHO05D012831 2.2e-14 84.3 283 31.1
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 3.8e-14 83.6 214 28.5
Rhsim12G0158900 Rhododendron simsii HOM05D000374 ORTHO05D000238 3.8e-14 83.6 305 28.5
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 4.9e-14 83.2 241 27.0
Rhsim10G0208800 Rhododendron simsii HOM05D012885 ORTHO05D010877 8.4e-14 82.4 244 28.3
Dinv28172 Davidia involucrata HOM05D011324 ORTHO05D013448 1.9e-13 81.3 221 30.3
Rhsim10G0137100 Rhododendron simsii HOM05D000374 ORTHO05D013046 1.9e-13 81.3 373 24.4
COL.COLO4_31618 Corchorus olitorius HOM05D044258 ORTHO05D044749 3.2e-13 80.5 297 26.3
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 3.2e-13 80.5 280 27.1
Rhsim03G0231000 Rhododendron simsii HOM05D018081 ORTHO05D026100 4.2e-13 80.1 257 28.0
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 5.5e-13 79.7 273 28.2
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 7.1e-13 79.3 293 26.6
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.1e-12 77.8 297 27.6
Ah.01g016270 Amaranthus hybridus HOM05D036488 ORTHO05D021181 2.7e-12 77.4 234 28.6
Ah.01g016360 Amaranthus hybridus HOM05D036488 ORTHO05D021181 2.7e-12 77.4 234 28.6
Ah.01g016440 Amaranthus hybridus HOM05D036488 ORTHO05D021181 2.7e-12 77.4 234 28.6
Rhsim05G0135400 Rhododendron simsii HOM05D013111 ORTHO05D013046 6.0e-12 76.3 345 24.6
COL.COLO4_05074 Corchorus olitorius HOM05D009781 ORTHO05D011819 1.8e-11 74.7 278 27.7
Rhsim07G0240000 Rhododendron simsii HOM05D013052 ORTHO05D012831 3.9e-11 73.6 211 29.9
Aqoxy1G01963 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 6.7e-11 72.8 246 28.5
RhsimUnG0035000 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.1e-10 72.0 311 28.0
QL11p042411 Quercus lobata HOM05D025344 ORTHO05D009743 2.1e-09 67.8 277 27.1
Lj3P635T20 Lonicera japonica HOM05D053282 ORTHO05D010877 2.8e-09 67.4 355 24.2
COL.COLO4_24092 Corchorus olitorius HOM05D014846 ORTHO05D016249 4.8e-09 66.6 256 28.5
QL11p055815 Quercus lobata HOM05D025344 ORTHO05D021181 1.1e-08 65.5 290 25.5
COL.COLO4_31368 Corchorus olitorius HOM05D017380 ORTHO05D019049 1.4e-08 65.1 195 30.3
Rhsim12G0051600 Rhododendron simsii HOM05D010628 ORTHO05D016249 2.4e-08 64.3 297 25.6
Thecc.07G157200 Theobroma cacao HOM05D009781 ORTHO05D011819 3.1e-08 63.9 149 32.2
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 4.0e-08 63.5 119 31.1
COL.COLO4_09561 Corchorus olitorius HOM05D014846 ORTHO05D016249 9.0e-08 62.4 260 30.0
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 1.2e-07 62.0 194 26.3
Rhsim03G0101600 Rhododendron simsii HOM05D001433 ORTHO05D021416 5.8e-07 59.7 195 26.7
Gohir.D06G026000 Gossypium hirsutum HOM05D009781 ORTHO05D011819 7.6e-07 59.3 252 27.8
Haze_19844 Corylus avellana HOM05D027064 ORTHO05D009743 1.0e-06 58.9 340 23.5
Gohir.D06G028300 Gossypium hirsutum HOM05D009781 ORTHO05D011819 1.3e-06 58.5 310 26.1
Gohir.D06G025700 Gossypium hirsutum HOM05D009781 ORTHO05D011819 1.7e-06 58.2 259 27.0
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 1.7e-06 58.2 95 37.9
CSS0041687 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 2.2e-06 57.8 244 26.2
COL.COLO4_09850 Corchorus olitorius HOM05D014846 ORTHO05D016249 3.8e-06 57.0 232 27.2
COL.COLO4_31297 Corchorus olitorius HOM05D017380 ORTHO05D019049 8.4e-06 55.8 106 34.0


User provided reference genes

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