Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 8.9e-33 142.9 67 100.0
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.4e-09 65.9 36 80.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 1.8e-09 65.5 37 75.7
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 5.3e-09 63.9 36 75.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 5.3e-09 63.9 36 77.8
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 5.3e-09 63.9 45 64.4
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 5.3e-09 63.9 37 70.3
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 5.3e-09 63.9 36 77.8
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 6.9e-09 63.5 36 75.0
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 6.9e-09 63.5 37 73.0
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.9e-09 63.5 36 75.0
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 6.9e-09 63.5 36 75.0
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 6.9e-09 63.5 36 75.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 6.9e-09 63.5 36 75.0
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 9.0e-09 63.2 36 75.0
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.2e-08 62.8 36 75.0
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.2e-08 62.8 36 75.0
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.5e-08 62.4 36 72.2
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.5e-08 62.4 36 72.2
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.5e-08 62.4 31 87.1
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.5e-08 62.4 35 77.1
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.5e-08 62.4 38 71.1
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 2.0e-08 62.0 36 72.2
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 2.0e-08 62.0 36 72.2
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 2.0e-08 62.0 37 70.3
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 69.4
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 2.6e-08 61.6 39 69.2
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.6e-08 61.6 36 72.2
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 3.4e-08 61.2 36 69.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 4.5e-08 60.8 36 69.4
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 4.5e-08 60.8 36 69.4
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 4.5e-08 60.8 36 69.4
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 4.5e-08 60.8 36 69.4
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 5.8e-08 60.5 36 69.4
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 5.8e-08 60.5 36 69.4
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 5.8e-08 60.5 36 69.4
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.8e-08 60.5 36 72.2
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 7.6e-08 60.1 36 66.7
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 7.6e-08 60.1 36 69.4
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 7.6e-08 60.1 36 72.2
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 7.6e-08 60.1 36 69.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 7.6e-08 60.1 36 72.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 7.6e-08 60.1 39 66.7
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 1.0e-07 59.7 45 57.8
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.0e-07 59.7 37 67.6
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.0e-07 59.7 45 57.8
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.0e-07 59.7 36 69.4
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 1.3e-07 59.3 37 67.6
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.3e-07 59.3 36 66.7
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.3e-07 59.3 36 69.4
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.3e-07 59.3 36 69.4
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 1.7e-07 58.9 36 69.4
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.7e-07 58.9 38 65.8
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.7e-07 58.9 35 71.4
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.2e-07 58.5 37 64.9
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 66.7
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 66.7
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 2.2e-07 58.5 45 57.8
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 66.7
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 69.4
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 66.7
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 66.7
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 2.2e-07 58.5 34 70.6
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 2.2e-07 58.5 36 66.7
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 2.9e-07 58.2 39 64.1
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 3.8e-07 57.8 36 66.7
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 3.8e-07 57.8 36 66.7
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 4.9e-07 57.4 37 64.9
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 4.9e-07 57.4 37 64.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 4.9e-07 57.4 37 64.9
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 4.9e-07 57.4 37 64.9
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 4.9e-07 57.4 37 64.9
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 4.9e-07 57.4 36 66.7
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 4.9e-07 57.4 37 64.9
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 6.5e-07 57.0 36 66.7
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.5e-07 57.0 40 62.5
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.5e-07 57.0 40 62.5
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.5e-07 57.0 40 62.5
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 8.4e-07 56.6 36 66.7
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 8.4e-07 56.6 36 63.9
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 8.4e-07 56.6 36 63.9
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 1.1e-06 56.2 37 62.2
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.1e-06 56.2 37 62.2
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 1.1e-06 56.2 37 62.2
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 1.4e-06 55.8 36 63.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.4e-06 55.8 36 63.9
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.9e-06 55.5 37 64.9
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 1.9e-06 55.5 36 63.9
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 2.5e-06 55.1 35 65.7
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 2.5e-06 55.1 36 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 3.2e-06 54.7 36 63.9
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 3.2e-06 54.7 35 68.6
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 3.2e-06 54.7 34 67.6
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 4.2e-06 54.3 35 65.7


User provided reference genes

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