Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.6e-140 502.7 242 100.0
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.9e-133 479.2 255 92.2
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 2.8e-108 395.6 254 76.8
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 6.2e-108 394.4 254 74.4
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.1e-107 393.7 253 76.3
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.7e-105 385.2 263 73.4
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.5e-101 373.2 267 68.9
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 3.1e-99 365.5 250 67.6
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 5.2e-99 364.8 254 71.3
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 4.4e-98 361.7 250 69.6
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.9e-96 356.3 250 66.0
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.0e-94 350.5 254 65.0
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.7e-94 349.7 254 67.3
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.0e-94 349.0 250 66.4
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 3.0e-94 349.0 255 65.1
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 6.6e-94 347.8 254 63.8
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 8.6e-94 347.4 252 65.1
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.5e-93 346.7 250 66.4
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.9e-93 346.3 254 65.4
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.6e-92 343.2 254 65.0
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 6.2e-92 341.3 247 66.0
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 1.8e-91 339.7 253 66.0
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.1e-91 339.0 241 70.5
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.2e-90 337.0 241 66.0
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 2.0e-90 336.3 254 65.0
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 3.4e-90 335.5 254 63.4
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 5.8e-90 334.7 253 64.4
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.8e-90 334.7 253 64.8
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 9.9e-90 334.0 254 63.4
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 2.2e-89 332.8 254 63.8
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 2.2e-89 332.8 253 64.8
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.2e-89 332.8 249 62.2
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 2.9e-89 332.4 255 62.7
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.8e-89 332.0 254 63.8
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 6.4e-89 331.3 254 63.4
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 8.4e-89 330.9 249 61.0
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 1.4e-88 330.1 254 63.0
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.4e-88 330.1 253 64.4
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.9e-88 329.7 254 62.6
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.9e-88 329.7 254 63.0
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 3.2e-88 328.9 250 61.6
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 4.2e-88 328.6 255 62.4
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 4.2e-88 328.6 224 69.6
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 5.4e-88 328.2 244 66.0
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.1e-88 327.8 248 65.3
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 9.3e-88 327.4 254 62.6
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.3e-88 327.4 255 61.6
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 9.3e-88 327.4 241 63.9
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.2e-87 327.0 289 56.4
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.6e-87 326.6 254 62.6
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.6e-87 326.6 250 61.6
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 2.7e-87 325.9 248 63.3
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.7e-87 325.9 254 61.4
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 3.5e-87 325.5 254 61.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 6.0e-87 324.7 255 61.6
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 7.8e-87 324.3 255 63.1
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.8e-87 324.3 248 64.9
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.3e-86 323.6 255 61.2
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.3e-86 323.6 232 65.1
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.7e-86 323.2 254 63.8
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 2.3e-86 322.8 256 60.2
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 3.9e-86 322.0 250 61.6
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 3.9e-86 322.0 254 62.2
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 3.9e-86 322.0 256 60.9
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 5.1e-86 321.6 248 64.5
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 8.7e-86 320.9 243 63.4
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 8.7e-86 320.9 243 63.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.7e-86 320.9 248 64.5
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 8.7e-86 320.9 243 62.6
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 2.5e-85 319.3 254 60.2
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 3.3e-85 318.9 243 62.6
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 3.3e-85 318.9 243 63.0
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 3.3e-85 318.9 243 61.7
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 3.3e-85 318.9 250 60.0
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 4.3e-85 318.5 245 62.0
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 7.3e-85 317.8 264 58.7
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 9.6e-85 317.4 240 62.1
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.3e-84 317.0 250 60.0
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 2.1e-84 316.2 240 61.7
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.8e-84 315.8 253 62.5
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 3.6e-84 315.5 251 60.6
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 4.8e-84 315.1 254 60.6
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 8.1e-84 314.3 248 61.3
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.8e-83 313.2 243 60.1
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 5.3e-83 311.6 251 59.4
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 1.5e-82 310.1 251 59.8
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.5e-82 310.1 252 59.5
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 2.0e-82 309.7 254 59.8
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 2.6e-82 309.3 253 60.1
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 3.4e-82 308.9 251 59.4
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 4.4e-82 308.5 253 58.5
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 7.6e-82 307.8 254 59.4
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.2e-81 306.2 267 59.2
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 4.9e-81 305.1 254 59.4
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 6.4e-81 304.7 277 55.6
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.9e-80 303.1 252 59.5
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 2.4e-80 302.8 254 58.3
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 3.2e-80 302.4 301 51.5
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 5.4e-80 301.6 254 58.7
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 9.3e-80 300.8 254 58.3
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.6e-79 300.1 241 60.6
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.1e-79 299.7 241 63.1
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 2.1e-79 299.7 252 55.6
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.7e-79 299.3 239 60.3
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 6.0e-79 298.1 283 51.9
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 6.6e-78 294.7 227 62.6
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.6e-76 290.0 255 56.5
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.8e-76 288.5 247 56.3
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.8e-76 288.5 247 56.3
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 6.2e-76 288.1 244 58.6
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.6e-74 282.7 252 54.4
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.7e-71 272.7 192 66.1
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 1.5e-69 266.9 181 68.0
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 4.3e-69 265.4 181 67.4
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 7.4e-69 264.6 181 66.3
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 9.0e-67 257.7 217 58.1
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.1e-64 250.8 245 51.4
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 7.1e-64 248.1 242 50.0
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 7.1e-64 248.1 180 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.1e-61 240.7 226 50.0
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 2.5e-61 239.6 188 60.1
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 9.0e-59 231.1 138 79.0
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.4e-58 229.2 181 58.0
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.9e-54 215.7 237 42.6
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.7e-53 211.8 181 53.6
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 5.9e-50 201.8 116 75.9
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.9e-48 196.8 170 52.9
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.5e-48 196.4 182 57.1
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 4.2e-48 195.7 242 45.5
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 9.4e-48 194.5 138 65.2
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 5.1e-46 188.7 226 45.1
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 7.4e-45 184.9 192 48.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.1e-43 181.0 247 42.1
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.7e-41 173.7 266 38.3
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.4e-38 164.1 114 62.3
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.8e-38 163.7 139 59.7
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.8e-38 163.7 219 38.8
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 2.3e-38 163.3 126 57.9
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 8.2e-36 154.8 126 61.1
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 1.9e-32 143.7 230 34.8
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.3e-28 131.0 107 57.9
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.7e-28 129.4 99 63.6
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 4.0e-22 109.4 67 73.1
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.4e-21 106.3 86 57.0
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.4e-21 105.9 65 69.2
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 5.2e-14 82.4 55 69.1
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 1.1e-11 74.7 68 47.1


User provided reference genes

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