Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.7e-114 414.8 204 100.0
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.9e-79 298.5 215 73.5
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.6e-77 293.1 213 73.2
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 2.1e-77 292.7 213 73.2
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 3.1e-76 288.9 218 72.5
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.1e-76 288.9 217 71.9
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.0e-75 286.2 218 72.9
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.0e-75 286.2 207 75.4
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.6e-75 285.8 214 71.5
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.4e-75 285.0 216 72.2
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 7.6e-75 284.3 215 73.5
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.2e-74 282.7 215 69.8
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.9e-74 282.3 214 71.5
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 3.8e-74 282.0 212 72.2
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 4.9e-74 281.6 212 73.1
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 8.4e-74 280.8 216 71.3
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.4e-73 280.0 214 71.5
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.4e-73 280.0 215 71.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.9e-73 279.6 210 72.4
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.2e-73 278.9 215 72.6
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 3.2e-73 278.9 212 72.2
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.1e-73 277.7 212 72.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 9.3e-73 277.3 213 70.4
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 9.3e-73 277.3 216 69.9
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.2e-72 276.9 216 70.8
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 2.1e-72 276.2 211 71.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.1e-72 276.2 210 71.4
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.1e-72 276.2 216 70.8
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 2.1e-72 276.2 211 70.6
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.1e-72 276.2 218 68.8
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.7e-72 275.8 213 71.4
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.7e-72 275.8 212 71.7
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.5e-72 275.4 219 69.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 6.0e-72 274.6 215 70.2
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 7.8e-72 274.2 218 71.1
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 7.8e-72 274.2 210 71.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 1.0e-71 273.9 208 72.6
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.0e-71 273.9 216 69.9
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.3e-71 273.5 219 69.4
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.3e-71 273.5 207 72.9
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.7e-71 273.1 216 69.4
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.3e-71 272.7 217 69.1
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.0e-71 272.3 210 71.9
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.9e-71 271.9 212 73.1
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 5.1e-71 271.6 208 72.1
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 5.1e-71 271.6 208 72.1
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 6.6e-71 271.2 216 69.4
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 8.7e-71 270.8 215 70.2
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 8.7e-71 270.8 216 70.4
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.7e-71 270.8 211 73.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 8.7e-71 270.8 205 71.7
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.5e-70 270.0 214 69.6
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.5e-70 270.0 216 69.9
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.9e-70 269.6 216 69.9
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.9e-70 269.6 216 69.0
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.3e-70 268.9 215 70.2
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 4.3e-70 268.5 216 69.9
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 4.3e-70 268.5 218 68.8
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 5.6e-70 268.1 213 70.0
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 5.6e-70 268.1 208 71.2
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 5.6e-70 268.1 208 71.2
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.3e-70 267.7 212 70.3
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 7.3e-70 267.7 210 69.0
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 9.6e-70 267.3 212 70.3
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.6e-70 267.3 212 68.4
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 9.6e-70 267.3 210 71.0
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.3e-69 266.9 212 71.7
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.6e-69 266.5 210 69.5
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 2.8e-69 265.8 212 70.3
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 2.8e-69 265.8 212 70.8
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.8e-69 265.8 212 69.8
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.8e-69 265.8 213 69.5
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 3.6e-69 265.4 216 70.4
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 3.6e-69 265.4 213 71.8
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 4.8e-69 265.0 222 67.6
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 4.8e-69 265.0 208 70.7
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.2e-69 264.6 212 70.3
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 6.2e-69 264.6 217 66.4
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 6.2e-69 264.6 211 69.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.1e-68 263.8 202 71.3
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.1e-68 263.8 214 67.3
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.4e-68 263.5 216 68.5
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.4e-68 263.5 212 69.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.8e-68 263.1 216 69.0
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.8e-68 263.1 216 69.0
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.8e-68 263.1 205 69.3
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.0e-68 261.9 207 71.0
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.0e-68 261.9 207 71.0
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 9.0e-68 260.8 222 67.6
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 9.0e-68 260.8 207 71.0
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 9.0e-68 260.8 215 67.9
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-67 260.4 207 70.5
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.2e-67 260.4 212 69.8
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 1.2e-67 260.4 210 69.5
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.4e-67 258.8 209 69.4
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.4e-67 258.5 209 68.4
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 5.8e-67 258.1 205 68.3
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 9.9e-67 257.3 205 69.8
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.7e-66 256.5 210 67.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 4.9e-66 255.0 197 72.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.9e-66 255.0 205 68.8
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.1e-65 253.8 206 67.5
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.4e-65 252.7 210 67.1
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 4.2e-65 251.9 212 66.0
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 5.4e-65 251.5 211 65.4
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 5.4e-65 251.5 207 66.7
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 5.4e-65 251.5 210 67.1
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.3e-65 250.8 204 69.1
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.2e-64 250.4 210 66.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.6e-64 250.0 213 66.2
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.7e-64 249.2 211 67.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 2.7e-64 249.2 228 64.9
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.5e-64 248.8 211 65.9
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.0e-63 245.7 189 70.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 3.0e-63 245.7 183 71.6
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 5.1e-63 245.0 210 65.7
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 1.5e-62 243.4 213 64.8
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.5e-62 243.4 213 64.8
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.9e-62 243.0 212 64.6
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.9e-62 243.0 212 64.6
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 7.4e-62 241.1 215 63.7
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 2.8e-61 239.2 188 69.7
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 6.2e-61 238.0 212 62.3
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 6.2e-61 238.0 214 63.1
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 8.1e-61 237.7 213 63.4
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 1.1e-60 237.3 210 64.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.8e-60 236.5 209 66.0
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.8e-60 236.5 209 66.0
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.4e-60 236.1 153 78.4
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 4.0e-60 235.3 211 63.0
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.0e-60 235.3 153 78.4
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.0e-60 235.3 214 61.2
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.9e-58 228.4 214 59.8
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 8.4e-58 227.6 154 74.7
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.1e-57 227.3 210 61.4
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.4e-57 226.9 154 74.0
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 3.2e-57 225.7 150 74.7
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 4.2e-57 225.3 163 71.2
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.7e-56 222.6 211 58.3
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.1e-54 217.2 150 72.7
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.9e-54 216.5 203 61.1
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 5.6e-54 214.9 218 60.1
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.2e-48 197.2 188 60.6
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 3.9e-47 192.2 161 63.4
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 8.7e-47 191.0 115 77.4
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 8.2e-45 184.5 120 71.7
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.6e-43 179.5 214 54.2
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 6.1e-40 168.3 217 53.0
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.0e-39 167.5 92 85.9
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.6e-32 142.1 74 91.9
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.7e-30 134.4 211 47.9
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 7.5e-14 81.6 105 53.3
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.8e-12 77.0 105 51.4
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 3.1e-12 76.3 105 51.4
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 8.0e-08 61.6 101 43.6


User provided reference genes

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