Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.5e-194 681.0 333 100.0
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-137 493.4 339 72.9
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.1e-135 484.2 339 71.1
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-132 476.9 333 71.8
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 8.2e-127 457.6 327 70.9
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.8e-126 456.4 348 67.0
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 5.3e-126 454.9 337 69.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.0e-116 424.1 332 64.2
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 5.5e-115 418.3 338 63.0
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.7e-114 416.0 339 63.1
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 8.8e-113 411.0 335 62.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-112 410.6 337 62.6
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.3e-112 409.1 339 61.9
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 3.3e-112 409.1 323 63.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.7e-112 408.3 341 61.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 5.7e-112 408.3 328 62.8
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-111 406.4 341 61.9
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-110 403.7 341 61.3
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.5e-109 398.7 341 63.0
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.9e-109 398.3 329 62.0
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.9e-108 396.0 335 59.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 4.2e-107 392.1 330 60.9
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 7.9e-106 387.9 329 61.4
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.0e-105 387.5 326 61.0
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 5.1e-105 385.2 323 60.7
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.3e-104 382.5 337 58.2
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 5.7e-104 381.7 336 57.1
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 7.4e-104 381.3 341 58.7
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 7.4e-104 381.3 282 70.6
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.8e-103 378.6 337 57.9
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 4.1e-102 375.6 321 61.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.1e-102 375.6 332 58.7
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 4.1e-102 375.6 330 58.8
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.0e-102 374.8 316 61.1
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 7.0e-102 374.8 324 59.3
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.2e-101 374.0 326 61.0
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.0e-101 373.2 321 61.7
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.0e-100 370.9 301 63.5
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.2e-100 369.8 322 58.7
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.9e-100 369.4 334 56.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 6.5e-100 368.2 330 57.6
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.5e-99 366.3 330 58.2
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.2e-99 365.9 334 55.1
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 7.2e-99 364.8 317 59.6
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.6e-98 363.6 346 56.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.0e-98 361.3 330 57.6
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 8.0e-98 361.3 318 60.4
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 8.0e-98 361.3 317 57.1
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.0e-97 360.9 333 58.6
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 5.2e-97 358.6 303 61.1
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.1e-96 357.5 290 59.0
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-96 357.1 317 57.1
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.5e-96 357.1 339 56.6
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-96 356.3 317 56.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 7.4e-96 354.8 319 57.7
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 9.7e-96 354.4 290 63.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 2.8e-95 352.8 317 55.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 3.7e-95 352.4 319 57.4
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.7e-95 352.4 329 57.4
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.2e-95 351.3 317 54.9
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.8e-94 350.1 331 57.7
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.8e-94 350.1 319 58.3
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 2.4e-94 349.7 317 56.2
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.1e-94 349.0 313 59.1
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 5.3e-94 348.6 313 58.8
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 7.0e-94 348.2 280 65.0
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 9.1e-94 347.8 328 56.4
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 5.9e-93 345.1 325 56.3
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.9e-93 345.1 318 53.8
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 7.7e-93 344.7 315 59.4
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 7.7e-93 344.7 319 58.9
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 7.7e-93 344.7 333 54.4
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.3e-92 344.0 327 54.7
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.2e-92 343.2 321 57.0
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 2.2e-92 343.2 325 52.6
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 6.5e-92 341.7 322 55.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.5e-92 341.3 338 52.7
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 8.5e-92 341.3 314 57.0
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 8.5e-92 341.3 256 66.8
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.5e-91 340.5 327 52.6
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.9e-91 340.1 335 52.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.2e-91 339.3 333 55.0
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 3.2e-91 339.3 318 55.3
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.2e-91 339.0 325 56.3
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 5.5e-91 338.6 314 56.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 5.5e-91 338.6 330 52.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 5.5e-91 338.6 288 60.8
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.2e-91 338.2 333 54.7
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 7.2e-91 338.2 307 57.7
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 7.2e-91 338.2 333 52.9
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.4e-91 337.8 317 54.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-90 337.4 335 52.2
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-90 337.4 328 55.2
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.6e-90 337.0 311 56.3
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.6e-90 337.0 328 53.7
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-90 336.7 328 55.2
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.7e-90 336.3 320 53.8
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 4.7e-90 335.5 302 57.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 6.1e-90 335.1 328 53.4
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 8.0e-90 334.7 329 52.9
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 2.3e-89 333.2 286 60.8
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 3.0e-89 332.8 298 57.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.0e-89 332.8 332 52.4
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.0e-89 332.4 328 54.9
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 5.2e-89 332.0 250 66.0
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-88 330.9 328 54.3
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.2e-88 330.9 332 52.1
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.5e-88 330.5 335 50.7
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.0e-88 330.1 324 55.2
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.0e-88 330.1 331 52.0
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.6e-88 329.7 333 52.0
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 3.4e-88 329.3 333 52.0
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.4e-88 328.9 316 54.1
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.7e-88 328.6 330 53.9
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.7e-88 328.6 317 53.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 5.7e-88 328.6 261 63.6
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 7.5e-88 328.2 341 54.0
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.3e-87 327.4 315 56.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.3e-87 327.4 319 53.3
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.8e-87 326.2 288 60.1
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.8e-87 326.2 288 60.1
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 3.7e-87 325.9 337 50.4
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 4.8e-87 325.5 303 53.8
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 8.3e-87 324.7 308 53.6
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.8e-86 323.6 336 50.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.1e-86 322.8 303 53.5
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.3e-86 322.0 282 57.1
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 7.0e-86 321.6 301 53.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 9.1e-86 321.2 318 51.9
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 4.5e-85 318.9 322 52.8
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 7.7e-85 318.2 336 51.8
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.0e-84 317.8 336 49.1
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.7e-84 317.0 307 53.4
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 8.5e-84 314.7 301 53.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 8.5e-84 314.7 301 53.5
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 8.5e-84 314.7 295 57.3
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 3.2e-83 312.8 301 53.2
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 9.4e-83 311.2 301 53.2
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.8e-81 307.0 360 49.4
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.7e-77 293.1 299 50.2
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.7e-76 290.4 255 58.4
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.7e-74 282.3 276 55.8
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.8e-73 280.4 292 51.0
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.0e-73 279.3 278 51.8
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.6e-72 276.6 303 49.2
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 7.5e-72 275.0 247 55.9
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.2e-70 269.6 275 49.5
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 7.0e-70 268.5 281 50.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.3e-68 263.5 292 46.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.1e-67 261.2 286 47.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.8e-66 256.5 243 53.9
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 6.1e-66 255.4 268 51.9
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.4e-63 245.4 160 73.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-60 237.7 243 51.9
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 4.7e-58 229.2 157 66.9
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 3.1e-57 226.5 183 58.5
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-50 203.8 229 48.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 3.1e-49 199.9 228 48.7
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 5.2e-49 199.1 215 47.9
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.0e-48 197.2 153 65.4
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.4e-48 196.1 149 63.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 5.4e-46 189.1 221 48.4
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 2.3e-44 183.7 225 47.1
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 3.0e-44 183.3 280 41.8
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.2e-42 177.9 253 40.7
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 9.9e-40 168.3 203 48.3
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 8.4e-31 138.7 107 67.3
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.1e-29 134.0 89 70.8
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.0e-28 131.7 92 68.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.8e-26 122.9 78 73.1
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 3.4e-24 116.7 119 47.1
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.7e-23 114.4 81 65.4
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 5.6e-19 99.4 80 61.2
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 9.0e-17 92.0 83 56.6
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.8e-10 70.5 56 58.9


User provided reference genes

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