Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012662 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.7e-84 315.8 152 100.0
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 3.4e-56 221.9 118 93.2
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.7e-34 149.8 116 64.7
vmacro16013 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 8.5e-23 110.9 108 50.0
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 8.3e-18 94.4 108 44.4
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 4.5e-16 88.6 83 50.6
RhsimUnG0104500 Rhododendron simsii HOM05D000395 ORTHO05D000088 4.5e-16 88.6 94 48.9
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.3e-15 86.3 106 46.2
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 1.2e-11 73.9 110 36.4
Lj4C136T19 Lonicera japonica HOM05D000395 ORTHO05D000088 2.0e-11 73.2 117 35.9
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 3.4e-11 72.4 117 34.2
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 5.7e-11 71.6 108 38.9
Lj2A564T41 Lonicera japonica HOM05D000395 ORTHO05D000088 1.3e-10 70.5 108 35.2
Cpa.g.sc128.16 Carica papaya HOM05D000823 ORTHO05D000088 1.7e-10 70.1 145 30.3
arahy.Tifrunner.gnm1.ann1.B2IBRN Arachis hypogaea HOM05D000395 ORTHO05D000088 1.1e-09 67.4 134 34.3
Eucgr.G01245 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.1e-09 67.4 83 38.6
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 1.8e-09 66.6 73 39.7
arahy.Tifrunner.gnm1.ann1.68615N Arachis hypogaea HOM05D000395 ORTHO05D000088 4.1e-09 65.5 77 41.6
Eucgr.G00888 Eucalyptus grandis HOM05D000395 ORTHO05D000088 4.1e-09 65.5 74 36.5
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 4.1e-09 65.5 73 39.7
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 4.1e-09 65.5 80 46.2
PSO541G5266 Papaver somniferum HOM05D000395 ORTHO05D000088 4.1e-09 65.5 102 34.3
PSO675G3266 Papaver somniferum HOM05D000395 ORTHO05D000088 5.4e-09 65.1 102 34.3
RcHm_v2.0_Chr2g0103491 Rosa chinensis HOM05D000395 ORTHO05D000088 5.4e-09 65.1 72 36.1
Prupe.7G143800 Prunus persica HOM05D000395 ORTHO05D000088 7.0e-09 64.7 77 44.2
Lj2A565G29 Lonicera japonica HOM05D000395 ORTHO05D000088 9.2e-09 64.3 72 40.3
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.2e-08 63.9 73 39.7
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 1.2e-08 63.9 71 43.7
Lj2P565T31 Lonicera japonica HOM05D000395 ORTHO05D000088 1.2e-08 63.9 72 44.4
Manes.07G112905 Manihot esculenta HOM05D000395 ORTHO05D000088 1.2e-08 63.9 78 38.5
Manes.10G033300 Manihot esculenta HOM05D000395 ORTHO05D000088 1.2e-08 63.9 115 33.0
Dinv27599 Davidia involucrata HOM05D000395 ORTHO05D000088 2.0e-08 63.2 99 32.3
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.0e-08 63.2 73 37.0
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 2.0e-08 63.2 75 41.3
Dinv26760 Davidia involucrata HOM05D000395 ORTHO05D000088 2.7e-08 62.8 109 37.6
arahy.Tifrunner.gnm1.ann1.WFEC9T Arachis hypogaea HOM05D000395 ORTHO05D000088 4.6e-08 62.0 81 40.7
GSVIVG01005087001 Vitis vinifera HOM05D000395 ORTHO05D000088 5.9e-08 61.6 61 42.6
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 7.8e-08 61.2 135 33.3
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 7.8e-08 61.2 109 31.2
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.8e-08 61.2 72 34.7
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 7.8e-08 61.2 81 37.0
Lj4A136T86 Lonicera japonica HOM05D000395 ORTHO05D000088 1.0e-07 60.8 89 33.7
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.3e-07 60.5 96 35.4
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.3e-07 60.5 107 35.5
Potri.004G230100 Populus trichocarpa HOM05D000395 ORTHO05D000088 1.3e-07 60.5 86 33.7
Dinv26763 Davidia involucrata HOM05D000395 ORTHO05D000088 1.7e-07 60.1 78 41.0
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.7e-07 60.1 107 35.5
Prupe.7G143500 Prunus persica HOM05D000395 ORTHO05D000088 1.7e-07 60.1 79 36.7
TPR.G2870 Trifolium pratense HOM05D000395 ORTHO05D000088 1.7e-07 60.1 103 35.0
Eucgr.G00889 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.3e-07 59.7 76 40.8
FvH4_6g38690 Fragaria vesca HOM05D000395 ORTHO05D000088 2.3e-07 59.7 82 35.4
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.3e-07 59.7 82 35.4
Prupe.7G144000 Prunus persica HOM05D000395 ORTHO05D000088 3.0e-07 59.3 89 33.7
QL06p043952 Quercus lobata HOM05D000395 ORTHO05D000088 3.0e-07 59.3 107 33.6
Eucgr.G00890 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.9e-07 58.9 76 40.8
Lj2A600G55 Lonicera japonica HOM05D000395 ORTHO05D000088 3.9e-07 58.9 111 29.7
PSO541G4430 Papaver somniferum HOM05D000395 ORTHO05D000088 3.9e-07 58.9 104 30.8
arahy.Tifrunner.gnm1.ann1.T57XL4 Arachis hypogaea HOM05D000395 ORTHO05D000088 5.0e-07 58.5 111 36.9
MD15G1302000 Malus domestica HOM05D000395 ORTHO05D000088 5.0e-07 58.5 77 33.8
Medtr3g061310 Medicago truncatula HOM05D000395 ORTHO05D000088 6.6e-07 58.2 115 29.6
PSO339G4062 Papaver somniferum HOM05D000395 ORTHO05D000088 6.6e-07 58.2 95 33.7
Gohir.D10G094400 Gossypium hirsutum HOM05D000395 ORTHO05D000088 8.6e-07 57.8 97 30.9
Prupe.7G044800 Prunus persica HOM05D000395 ORTHO05D000088 8.6e-07 57.8 86 30.2
TPR.G14731 Trifolium pratense HOM05D000395 ORTHO05D000088 8.6e-07 57.8 102 36.3
vmacro17896 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 8.6e-07 57.8 61 49.2
arahy.Tifrunner.gnm1.ann1.ICSV9P Arachis hypogaea HOM05D000395 ORTHO05D000088 1.1e-06 57.4 81 39.5
Lj5g0011145 Lotus japonicus HOM05D000395 ORTHO05D000088 1.1e-06 57.4 76 35.5
CANSAT01G0530 Cannabis sativa HOM05D000395 ORTHO05D000088 1.5e-06 57.0 127 29.1
PSO017G7380 Papaver somniferum HOM05D000395 ORTHO05D000088 1.9e-06 56.6 135 27.4
DCAR_003837 Daucus carota HOM05D000395 ORTHO05D000088 2.5e-06 56.2 89 34.8
FAN26G3456 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.5e-06 56.2 94 38.3
Lalb_Chr10g0095161 Lupinus albus HOM05D000395 ORTHO05D000088 2.5e-06 56.2 75 36.0
RcHm_v2.0_Chr2g0118951 Rosa chinensis HOM05D000395 ORTHO05D000088 3.3e-06 55.8 73 35.6
FvH4_7g02010 Fragaria vesca HOM05D000395 ORTHO05D000088 4.3e-06 55.5 76 31.6
Glyma.09G117200 Glycine max HOM05D000395 ORTHO05D000088 4.3e-06 55.5 68 39.7
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 5.6e-06 55.1 82 40.2
Eucgr.I00397 Eucalyptus grandis HOM05D000395 ORTHO05D000088 5.6e-06 55.1 76 36.8
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.6e-06 55.1 76 31.6
Lj2A566T40 Lonicera japonica HOM05D000395 ORTHO05D000088 5.6e-06 55.1 70 38.6
Lalb_Chr10g0095141 Lupinus albus HOM05D000395 ORTHO05D000088 5.6e-06 55.1 89 30.3
Medtr3g061370 Medicago truncatula HOM05D000395 ORTHO05D000088 5.6e-06 55.1 103 35.0
Prupe.7G143900 Prunus persica HOM05D000395 ORTHO05D000088 5.6e-06 55.1 95 32.6
TPR.G14716 Trifolium pratense HOM05D000395 ORTHO05D000088 5.6e-06 55.1 80 37.5
Gorai.011G103800 Gossypium raimondii HOM05D000395 ORTHO05D000088 7.3e-06 54.7 76 32.9
Lj6C562T8 Lonicera japonica HOM05D000823 ORTHO05D000088 7.3e-06 54.7 84 34.5
Prupe.7G144200 Prunus persica HOM05D000395 ORTHO05D000088 7.3e-06 54.7 80 41.2
TPR.G14727 Trifolium pratense HOM05D000395 ORTHO05D000088 9.5e-06 54.3 78 37.2


User provided reference genes

Program Settings