Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 2334.7 1203 100.0
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1781.9 1212 77.1
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1694.5 1213 74.1
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1682.5 1214 73.0
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1637.5 1235 70.4
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1627.5 1234 70.7
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1604.0 1212 70.8
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1601.6 1063 78.6
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1588.2 1226 68.8
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1565.4 1227 69.2
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1558.1 1222 68.3
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1551.2 1232 68.0
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1549.3 1239 67.2
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1544.6 1223 67.4
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1533.5 1222 66.5
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1524.6 1218 66.5
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1518.8 1229 65.8
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1509.6 1214 66.6
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1507.3 1166 67.8
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1506.5 1227 65.7
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1505.7 1212 66.3
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1505.7 1204 67.4
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1502.6 1229 65.4
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1502.6 1227 65.9
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1501.9 1227 65.9
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1500.7 1214 65.6
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1500.0 1225 66.0
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1491.9 1207 66.0
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1478.8 1151 67.1
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1478.4 1227 66.3
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1477.2 1223 66.1
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1476.8 1227 65.9
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1476.1 1231 65.2
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1463.7 1224 64.5
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1457.2 1231 63.8
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1456.8 1230 65.9
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1451.4 1162 65.7
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1446.8 1235 64.2
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1446.8 1237 64.3
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1446.0 1215 64.9
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1444.9 1219 63.6
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1442.9 1217 63.7
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1442.2 1199 66.3
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1442.2 1233 64.2
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1438.7 1220 63.6
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1437.2 1220 63.5
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1434.5 1154 64.9
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1425.6 1219 63.4
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1420.6 1145 65.1
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1420.6 1145 65.1
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1419.8 1236 63.2
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1417.5 1195 65.8
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1411.4 1226 62.9
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1409.4 1162 65.7
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1406.7 1241 62.2
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1406.3 1143 65.8
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1405.2 1194 63.1
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1402.5 1230 62.2
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1399.4 1123 64.9
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1399.4 1189 63.5
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1395.2 1215 63.1
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1394.4 1080 67.3
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1394.4 1055 71.8
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1390.2 1149 64.1
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1388.2 1150 65.0
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1387.9 1178 64.1
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1386.3 1230 62.4
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1385.5 1189 62.4
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1370.1 923 76.8
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1367.8 1221 61.8
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1365.1 1194 62.6
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1360.1 1089 65.5
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1357.4 1225 61.2
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1345.5 1225 61.0
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1316.2 1234 58.5
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1303.5 1155 61.5
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1298.1 954 69.6
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1286.6 1248 57.7
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1283.5 1250 58.3
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1278.8 952 69.6
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1263.8 1062 64.1
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1262.3 955 68.7
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1253.4 969 66.8
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1252.3 955 67.9
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1244.6 1072 62.7
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1243.8 1157 58.3
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1238.0 948 68.1
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1233.4 955 66.3
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1232.6 951 66.5
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1229.2 1015 64.8
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1214.5 1202 57.9
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1192.2 1038 63.2
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1166.8 955 64.1
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 0.0e+00 1137.1 1204 55.1
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1104.4 873 65.2
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 0.0e+00 1095.1 1036 60.0
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.2e-310 1070.1 1109 55.1
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.5e-295 1019.2 973 58.1
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 9.2e-245 851.3 905 53.9
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.0e-243 847.8 1201 44.5
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 1.2e-236 824.3 1096 45.5
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 9.5e-234 814.7 1080 44.7
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 2.3e-227 793.5 1230 44.6
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.9e-210 737.3 1122 41.6
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-194 684.9 736 55.8
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 4.2e-189 666.4 524 63.9
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.1e-179 632.9 569 58.7
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.2e-167 595.1 461 65.5
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.3e-166 591.7 737 47.4
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 2.9e-121 441.0 1359 29.4
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-110 405.2 331 66.2
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-110 405.2 331 66.2
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-110 405.2 331 66.2
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 1.0e-94 352.8 201 81.6
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 1.8e-91 342.0 315 56.8
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 2.2e-81 308.5 172 82.6
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 9.3e-80 303.1 277 62.5
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-79 302.0 234 69.2
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 2.7e-79 301.6 179 79.9
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-75 288.9 257 63.0
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 1.5e-74 285.8 158 84.2
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 7.9e-71 273.5 153 83.0
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 7.4e-69 266.9 151 83.4
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 1.0e-65 256.5 183 74.9
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 6.9e-59 233.8 128 83.6
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.9e-48 199.1 254 52.0
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.3e-46 192.2 264 44.7
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 8.8e-46 190.3 175 57.7
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.6e-45 188.7 107 83.2
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 6.3e-44 184.1 302 38.1
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 3.1e-43 181.8 268 39.6
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 2.0e-42 179.1 100 83.0
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.0e-27 127.5 189 43.9
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 3.5e-26 125.2 142 55.6
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 2.7e-23 115.5 199 44.2
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.0e-22 113.6 276 29.7
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 2.3e-22 112.5 72 75.0
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.0e-22 111.7 274 30.7
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 8.8e-22 110.5 113 60.2
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 9.8e-21 107.1 274 35.4
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.8e-20 104.8 288 28.1
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.8e-19 102.8 283 26.1
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 3.1e-19 102.1 69 73.9
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.0e-19 100.9 270 28.1
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-18 100.1 283 26.5
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-17 96.7 302 28.1
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.9e-17 95.5 302 27.8
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.6e-17 94.4 272 29.0
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-16 93.6 300 28.0
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 7.2e-16 90.9 280 28.6
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.7e-15 88.2 303 27.4
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 4.7e-15 88.2 46 82.6
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.4e-14 86.7 302 26.5
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 3.0e-14 85.5 303 28.4
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.2e-13 83.6 55 74.5
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-13 83.2 149 32.9
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 9.8e-13 80.5 299 24.7
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.7e-12 79.7 309 23.0
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.8e-12 79.0 299 25.8
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 8.3e-12 77.4 293 24.6
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 1.7e-09 69.7 275 24.0
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.3e-09 69.3 152 30.9
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 2.9e-09 68.9 334 25.1
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 5.0e-09 68.2 46 78.3
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 6.6e-09 67.8 116 32.8
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.1e-08 67.0 38 76.3
Cfa022816 Carpinus fangiana HOM05D012225 ORTHO05D124422 2.5e-08 65.9 272 24.6
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 7.3e-08 64.3 253 23.7
Aa31LG2G16190 Aethionema arabicum HOM05D004348 ORTHO05D006191 2.1e-07 62.8 36 75.0
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-07 62.8 64 54.7
Mapoly0016s0166 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.1e-07 62.8 198 27.3
Cfa022866 Carpinus fangiana HOM05D012225 ORTHO05D125906 6.8e-06 57.8 208 25.0


User provided reference genes

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