Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 6.9e-89 330.5 152 100.0
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.7e-85 318.5 159 94.3
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 3.5e-85 318.2 159 93.1
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.0e-85 317.4 159 91.8
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 3.0e-84 315.1 159 91.2
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 3.0e-84 315.1 159 93.1
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 6.6e-84 313.9 159 93.1
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 8.7e-84 313.5 159 91.2
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-83 312.8 159 91.2
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-83 312.8 159 91.2
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.5e-83 312.8 159 90.6
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 1.9e-83 312.4 159 92.5
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.9e-83 312.4 159 90.6
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.5e-83 312.0 159 91.8
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 91.2
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 89.9
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 89.9
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 5.6e-83 310.8 159 90.6
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.1e-82 308.9 159 90.6
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.1e-82 308.9 159 89.9
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.8e-82 308.5 157 91.7
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.8e-82 308.5 157 91.7
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.8e-82 308.5 157 91.7
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 3.6e-82 308.1 160 89.4
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.6e-82 308.1 159 91.2
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 4.8e-82 307.8 159 90.6
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 6.2e-82 307.4 159 89.9
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 6.2e-82 307.4 159 89.9
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-82 307.4 159 90.6
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.4e-81 306.2 158 89.2
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 4.0e-81 304.7 159 87.4
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.0e-80 302.4 159 88.7
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.0e-80 302.4 159 88.1
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 4.5e-80 301.2 159 87.4
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 5.8e-80 300.8 159 85.5
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 1.7e-79 299.3 159 86.8
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.9e-79 298.5 159 84.9
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 8.4e-79 297.0 159 87.4
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.9e-78 295.8 159 86.8
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.4e-78 295.4 158 86.1
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-77 292.7 159 85.5
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.7e-77 292.0 157 87.3
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.8e-76 289.3 159 84.3
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-76 289.3 159 84.9
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-76 288.5 151 88.7
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 5.1e-76 287.7 159 84.3
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 5.6e-75 284.3 158 82.9
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 3.7e-74 281.6 154 85.1
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 4.8e-74 281.2 159 82.4
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.5e-72 276.2 142 90.8
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 7.6e-72 273.9 144 88.9
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 7.6e-72 273.9 144 88.9
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 7.6e-72 273.9 144 88.9
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.0e-71 273.5 159 81.8
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.3e-71 273.1 134 93.3
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 3.8e-71 271.6 144 86.8
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 7.9e-69 263.8 139 88.5
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-67 259.6 159 79.2
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.3e-67 258.1 159 76.1
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.6e-66 256.1 159 77.4
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.3e-66 254.2 139 86.3
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-64 249.2 161 73.9
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-64 249.2 149 79.2
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.7e-63 246.1 134 88.1
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.2e-63 245.7 129 87.6
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 2.2e-63 245.7 144 82.6
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 7.2e-62 240.7 117 94.0
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.8e-60 236.1 134 84.3
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.1e-60 234.6 151 76.8
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 6.7e-60 234.2 159 71.7
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-59 233.4 159 71.7
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 9.7e-59 230.3 159 71.7
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 7.7e-56 220.7 112 91.1
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 2.2e-55 219.2 134 79.1
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 7.2e-54 214.2 139 73.4
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.7e-53 212.2 105 95.2
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-51 206.8 135 74.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 2.0e-51 206.1 102 89.2
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.3e-50 203.4 97 97.9
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 6.3e-50 201.1 95 95.8
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 8.2e-50 200.7 158 64.6
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.4e-49 199.9 101 90.1
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.5e-48 196.4 134 74.6
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 4.5e-48 194.9 100 92.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 4.5e-48 194.9 100 92.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 4.5e-48 194.9 100 92.0
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.0e-47 193.7 109 86.2
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 8.5e-47 190.7 109 84.4
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.4e-46 189.9 159 61.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.4e-46 189.9 159 61.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.4e-46 189.9 159 61.0
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 2.5e-46 189.1 124 71.8
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 4.2e-46 188.3 101 86.1
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.6e-45 186.4 109 81.7
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 3.6e-45 185.3 107 81.3
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 3.6e-45 185.3 107 81.3
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.7e-45 184.9 101 86.1
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.8e-44 183.0 162 64.2
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.3e-44 182.6 108 77.8
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 5.2e-44 181.4 92 92.4
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 8.8e-44 180.6 149 68.5
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 4.4e-43 178.3 100 84.0
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.3e-42 176.8 100 85.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.7e-42 176.4 83 97.6
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 4.8e-42 174.9 83 96.4
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 4.8e-42 174.9 84 94.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 8.2e-42 174.1 90 85.6
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 8.2e-42 174.1 98 81.6
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.4e-41 173.3 83 94.0
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.4e-41 173.3 111 75.7
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 5.3e-41 171.4 89 87.6
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 9.1e-41 170.6 83 91.6
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.0e-39 167.2 83 89.2
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 4.7e-37 158.3 80 92.5
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.0e-36 155.6 78 92.3
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.3e-35 152.1 100 73.0
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 2.8e-34 149.1 72 93.1
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.8e-34 149.1 84 82.1
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.8e-33 146.4 83 80.7
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 7.0e-33 144.4 68 97.1
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 3.8e-31 138.7 74 86.5
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.8e-31 138.7 76 85.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-30 135.6 65 93.8
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.8e-28 127.9 59 93.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.6e-27 125.9 57 96.5
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-25 120.6 59 91.5
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.4e-25 119.4 119 56.3
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.5e-24 115.2 58 86.2
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.5e-24 115.2 58 87.9
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 2.1e-21 106.3 53 86.8
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.0e-21 104.4 50 94.0
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.8e-20 103.2 99 53.5
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-17 94.0 62 71.0
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 9.2e-17 90.9 54 79.6
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.5e-16 88.6 44 86.4
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 1.3e-15 87.0 45 82.2
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 5.0e-15 85.1 48 81.2
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.1e-13 79.7 39 89.7
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 4.4e-11 72.0 53 62.3
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 5.7e-11 71.6 43 76.7
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.2e-10 69.7 86 43.0
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 3.7e-10 68.9 32 93.8
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.8e-09 66.6 68 48.5
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 7.8e-08 61.2 60 58.3
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 3.3e-06 55.8 38 63.2
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 9.5e-06 54.3 27 88.9


User provided reference genes

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