Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 1.0e-51 206.5 105 100.0
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.5e-21 106.3 107 54.2
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.0e-19 100.1 104 53.8
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.0e-19 100.1 105 54.3
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.5e-18 96.3 104 52.9
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 2.2e-17 92.4 107 54.2
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 3.7e-17 91.7 97 56.7
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 4.8e-17 91.3 103 51.5
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 8.3e-17 90.5 107 53.3
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 8.3e-17 90.5 107 53.3
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 8.3e-17 90.5 101 51.5
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 1.8e-16 89.4 90 55.6
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.4e-16 87.8 108 51.9
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.2e-15 86.7 107 52.3
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 3.5e-15 85.1 105 46.7
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 4.5e-15 84.7 80 56.2
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 4.5e-15 84.7 102 48.0
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 7.7e-15 84.0 103 49.5
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.3e-14 83.2 80 55.0
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.9e-13 79.3 99 51.5
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 6.1e-12 74.3 101 47.5
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 8.0e-12 73.9 79 53.2
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 1.0e-11 73.6 106 43.4
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 4.0e-11 71.6 104 40.4
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 5.2e-11 71.2 84 51.2
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 1.2e-10 70.1 112 45.5
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.6e-10 68.9 70 51.4
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 3.4e-10 68.6 90 47.8
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.7e-10 67.8 106 44.3
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 5.7e-10 67.8 104 45.2
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.8e-09 65.5 66 48.5
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 3.7e-09 65.1 91 47.3
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 4.9e-09 64.7 100 44.0
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 8.3e-09 63.9 61 49.2
EL10Ac9g21645 Beta vulgaris HOM05D009695 ORTHO05D007271 1.1e-08 63.5 86 43.0
Lalb_Chr02g0152111 Lupinus albus HOM05D007861 ORTHO05D007271 4.1e-08 61.6 72 48.6
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 5.4e-08 61.2 53 49.1
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 7.0e-08 60.8 101 43.6
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 1.6e-07 59.7 111 41.4
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.6e-07 59.7 111 41.4
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.6e-07 59.7 111 41.4
TAR623G0050 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.6e-07 59.7 83 48.2
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 2.7e-07 58.9 104 39.4
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 2.7e-07 58.9 84 42.9
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 4.5e-07 58.2 102 44.1
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 4.5e-07 58.2 104 37.5
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 7.7e-07 57.4 105 38.1
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.0e-06 57.0 108 41.7
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.0e-06 57.0 105 41.9
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 1.3e-06 56.6 111 38.7
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 1.3e-06 56.6 73 45.2
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 1.3e-06 56.6 108 43.5
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 1.3e-06 56.6 104 39.4
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.7e-06 56.2 115 33.0
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.7e-06 56.2 115 33.0
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.3e-06 55.8 105 39.0
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.3e-06 55.8 104 34.6
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.3e-06 55.8 111 40.5
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 2.3e-06 55.8 111 40.5
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 2.9e-06 55.5 100 38.0
CARHR164810 Cardamine hirsuta HOM05D009695 ORTHO05D007271 5.0e-06 54.7 98 36.7
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 6.6e-06 54.3 101 42.6
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 6.6e-06 54.3 106 42.5
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 6.6e-06 54.3 106 42.5
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 8.6e-06 53.9 93 38.7
PGSC0003DMG400007440 Solanum tuberosum HOM05D009695 ORTHO05D007271 8.6e-06 53.9 105 34.3


User provided reference genes

Program Settings