Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 3.6e-51 204.5 96 100.0
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 3.3e-20 101.7 83 61.4
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 5.8e-17 90.9 82 52.4
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 1.3e-16 89.7 84 52.4
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 7.1e-15 84.0 83 50.6
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 1.2e-14 83.2 87 49.4
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 1.2e-14 83.2 83 48.2
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 4.6e-14 81.3 82 51.2
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 7.8e-14 80.5 84 52.4
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 7.8e-14 80.5 85 50.6
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 1.0e-13 80.1 84 47.6
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 1.0e-13 80.1 79 54.4
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 1.7e-13 79.3 82 46.3
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.0e-13 78.6 82 46.3
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 3.9e-13 78.2 84 46.4
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 1.1e-12 76.6 87 42.5
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 1.5e-12 76.3 83 45.8
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.9e-12 75.9 82 46.3
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.9e-12 75.9 71 54.9
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.9e-12 75.9 85 48.2
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 2.5e-12 75.5 85 48.2
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 2.5e-12 75.5 82 45.1
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.5e-12 75.5 82 45.1
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 3.3e-12 75.1 88 47.7
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 5.6e-12 74.3 84 46.4
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 7.3e-12 73.9 71 52.1
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 7.3e-12 73.9 97 47.4
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 1.2e-11 73.2 84 50.0
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 2.1e-11 72.4 84 45.2
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.1e-11 72.4 72 50.0
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 2.1e-11 72.4 88 42.0
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 2.8e-11 72.0 82 42.7
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 3.6e-11 71.6 83 51.8
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 1.1e-10 70.1 48 64.6
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 1.1e-10 70.1 79 50.6
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 1.1e-10 70.1 38 71.1
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.4e-10 69.7 87 48.3
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 1.4e-10 69.7 91 48.4
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 1.8e-10 69.3 82 43.9
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 3.1e-10 68.6 92 43.5
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 3.1e-10 68.6 82 40.2
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 4.0e-10 68.2 90 46.7
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 4.0e-10 68.2 90 46.7
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 4.0e-10 68.2 90 46.7
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 5.2e-10 67.8 82 42.7
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 5.2e-10 67.8 89 40.4
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 8.9e-10 67.0 54 55.6
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.2e-09 66.6 49 57.1
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 2.0e-09 65.9 82 43.9
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 2.0e-09 65.9 66 51.5
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 2.0e-09 65.9 45 64.4
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 2.6e-09 65.5 38 71.1
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 4.4e-09 64.7 82 39.0
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 4.4e-09 64.7 82 39.0
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 7.6e-09 63.9 90 41.1
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 9.9e-09 63.5 29 79.3
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 9.9e-09 63.5 89 42.7
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 1.3e-08 63.2 87 42.5
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 1.7e-08 62.8 89 42.7
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 1.7e-08 62.8 46 60.9
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 3.8e-08 61.6 83 38.6
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 4.9e-08 61.2 77 41.6
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.1e-07 60.1 28 82.1
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 1.1e-07 60.1 56 50.0
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.4e-07 59.7 80 41.2
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 1.4e-07 59.7 57 50.9
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.9e-07 59.3 85 38.8
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.9e-07 59.3 56 50.0
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.9e-07 59.3 57 50.9
Eucgr.F03018 Eucalyptus grandis HOM05D007609 ORTHO05D009539 3.2e-07 58.5 81 40.7
Sed0016972 Sechium edule HOM05D007609 ORTHO05D009539 3.2e-07 58.5 58 55.2
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 3.2e-07 58.5 36 66.7
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 4.2e-07 58.2 77 37.7
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.2e-07 58.2 38 65.8
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 4.2e-07 58.2 37 62.2
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 5.4e-07 57.8 60 46.7
AUR62016446 Chenopodium quinoa HOM05D007609 ORTHO05D009539 7.1e-07 57.4 52 51.9
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 7.1e-07 57.4 82 40.2
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 7.1e-07 57.4 60 46.7
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 7.1e-07 57.4 57 49.1
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 9.3e-07 57.0 48 50.0
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 9.3e-07 57.0 91 36.3
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 9.3e-07 57.0 86 36.0
TAR624G1182 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.2e-06 56.6 74 43.2
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 1.6e-06 56.2 79 39.2
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 2.1e-06 55.8 82 39.0
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 2.7e-06 55.5 67 46.3
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 3.5e-06 55.1 26 73.1
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 3.5e-06 55.1 28 78.6
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 4.6e-06 54.7 30 66.7


User provided reference genes

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