Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 1.6e-172 609.4 314 100.0
CSS0043239 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 2.5e-53 213.4 146 77.4
CSS0012409 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 3.6e-52 209.5 132 81.8
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.8e-25 119.8 195 44.1
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 7.9e-23 112.1 210 37.1
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 1.1e-21 108.2 210 36.2
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 4.3e-21 106.3 169 40.8
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 9.7e-21 105.1 194 38.1
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 6.3e-20 102.4 88 61.4
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 8.2e-20 102.1 208 36.1
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 4.1e-19 99.8 157 44.6
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 2.0e-18 97.4 150 44.0
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 5.9e-18 95.9 200 40.0
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 7.7e-18 95.5 206 36.4
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 1.7e-17 94.4 186 36.0
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 1.4e-16 91.3 157 42.7
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.5e-16 90.5 145 41.4
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.5e-16 90.5 87 55.2
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 3.2e-16 90.1 88 54.5
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 7.2e-16 89.0 132 42.4
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 1.6e-15 87.8 98 49.0
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.1e-15 87.4 84 57.1
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 2.7e-15 87.0 86 57.0
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 3.6e-15 86.7 84 57.1
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 4.7e-15 86.3 90 54.4
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 4.7e-15 86.3 143 39.2
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 1.0e-14 85.1 105 43.8
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.3e-14 84.0 86 51.2
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 5.2e-14 82.8 86 50.0
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 6.7e-14 82.4 86 50.0
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.3e-13 80.1 86 48.8
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 4.4e-13 79.7 86 48.8
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 5.7e-13 79.3 86 46.5
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 1.7e-12 77.8 88 50.0
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 2.8e-12 77.0 97 48.5
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 6.3e-12 75.9 190 34.2
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 1.1e-11 75.1 87 46.0
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 1.8e-11 74.3 88 51.1
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 9.1e-11 72.0 166 33.1
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 1.2e-10 71.6 108 40.7
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 1.2e-10 71.6 285 28.8
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 1.2e-10 71.6 162 34.6
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 3.5e-10 70.1 86 48.8
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 4.5e-10 69.7 168 34.5
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 4.5e-10 69.7 88 48.9
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 7.7e-10 68.9 88 46.6
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 7.7e-10 68.9 85 43.5
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 1.0e-09 68.6 310 27.7
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.3e-09 68.2 90 45.6
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 2.2e-09 67.4 103 39.8
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 2.9e-09 67.0 110 40.0
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 6.5e-09 65.9 150 33.3
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 8.5e-09 65.5 41 73.2
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 8.5e-09 65.5 89 41.6
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 8.5e-09 65.5 89 41.6
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 8.5e-09 65.5 88 44.3
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 8.5e-09 65.5 272 29.4
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 1.1e-08 65.1 88 40.9
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 1.1e-08 65.1 88 40.9
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.1e-08 65.1 187 32.1
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 1.9e-08 64.3 83 42.2
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 3.2e-08 63.5 45 64.4
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 3.2e-08 63.5 97 41.2
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.2e-08 63.2 139 33.1
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 5.5e-08 62.8 101 40.6
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 5.5e-08 62.8 101 40.6
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 5.5e-08 62.8 54 59.3
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 5.5e-08 62.8 41 73.2
Aqoxy6G00395 Aquilegia oxysepala HOM05D011323 ORTHO05D010674 7.2e-08 62.4 187 32.1
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 9.4e-08 62.0 308 28.6
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 1.2e-07 61.6 83 45.8
Dinv42169 Davidia involucrata HOM05D023276 ORTHO05D026395 1.2e-07 61.6 38 76.3
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 2.1e-07 60.8 61 52.5
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 2.7e-07 60.5 69 50.7
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 2.7e-07 60.5 112 37.5
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 4.7e-07 59.7 36 75.0
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.7e-07 59.7 36 75.0
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 4.7e-07 59.7 155 34.8
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 8.0e-07 58.9 36 75.0
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.0e-06 58.5 66 53.0
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.0e-06 58.5 44 59.1
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.0e-06 58.5 44 59.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.0e-06 58.5 44 59.1
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 1.0e-06 58.5 73 42.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.0e-06 58.5 80 43.8
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 1.8e-06 57.8 36 72.2
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 1.8e-06 57.8 36 72.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.8e-06 57.8 48 64.6
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.3e-06 57.4 155 32.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.3e-06 57.4 36 75.0
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.3e-06 57.4 36 72.2
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.3e-06 57.4 36 75.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.3e-06 57.4 36 69.4
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 3.0e-06 57.0 88 43.2
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.0e-06 57.0 88 43.2
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 3.0e-06 57.0 54 53.7
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 3.0e-06 57.0 36 69.4
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.0e-06 57.0 36 69.4
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.0e-06 56.6 36 75.0
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 4.0e-06 56.6 36 72.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 4.0e-06 56.6 36 72.2
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.2e-06 56.2 48 60.4
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.2e-06 56.2 88 42.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 5.2e-06 56.2 181 28.2
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 5.2e-06 56.2 36 69.4
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 6.7e-06 55.8 88 43.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 6.7e-06 55.8 36 69.4
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 6.7e-06 55.8 36 69.4
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 6.7e-06 55.8 36 69.4
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 6.7e-06 55.8 36 69.4
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 8.8e-06 55.5 36 66.7
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 8.8e-06 55.5 36 66.7


User provided reference genes

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