Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.0e-158 562.4 290 100.0
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 3.1e-138 495.4 287 87.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.4e-130 469.9 287 82.9
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.8e-128 461.8 286 80.8
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.5e-126 455.3 286 78.7
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 7.9e-126 454.1 286 79.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.6e-118 429.9 286 76.2
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.1e-118 429.5 286 74.8
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.1e-118 429.5 286 75.5
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 7.9e-118 427.6 288 75.3
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.8e-117 426.4 286 75.5
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 5.1e-117 424.9 286 72.4
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.3e-116 422.2 288 73.6
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 7.4e-116 421.0 288 74.7
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 9.6e-116 420.6 288 73.6
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.3e-115 420.2 288 73.6
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.7e-115 418.7 288 72.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 4.8e-115 418.3 288 73.6
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 6.2e-115 417.9 288 73.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.4e-114 416.8 287 74.2
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 5.3e-114 414.8 286 71.7
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 2.6e-113 412.5 286 71.3
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.0e-112 410.6 288 73.6
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 8.4e-112 407.5 286 69.2
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.4e-111 406.8 287 73.2
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 3.2e-111 405.6 283 70.3
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.5e-111 404.8 254 79.9
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.1e-110 402.9 296 70.3
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.1e-110 402.9 254 79.5
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 6.0e-110 401.4 286 68.2
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.8e-109 399.8 286 73.1
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.1e-108 397.1 286 68.9
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.5e-108 396.0 286 71.0
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 4.3e-108 395.2 257 76.7
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 4.3e-108 395.2 287 68.6
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.4e-108 394.4 292 69.9
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.6e-107 393.3 286 68.5
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.8e-107 392.5 291 70.4
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.8e-107 392.5 265 72.5
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 2.8e-107 392.5 287 67.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 4.8e-107 391.7 287 67.9
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.1e-106 390.6 256 76.6
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.4e-106 389.4 283 69.6
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.1e-106 388.7 286 66.8
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 4.1e-106 388.7 287 67.9
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 4.1e-106 388.7 296 67.9
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.5e-105 386.7 282 68.4
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.9e-104 382.5 291 67.0
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 6.5e-104 381.3 286 67.8
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.1e-103 380.6 274 71.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-103 380.6 285 66.0
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 2.5e-103 379.4 296 67.6
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-102 377.1 285 65.6
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.6e-102 376.7 277 69.3
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.6e-102 376.7 252 70.6
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 3.6e-102 375.6 277 68.6
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 6.1e-102 374.8 287 66.9
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.0e-101 374.0 297 65.7
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.3e-101 372.9 290 66.9
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.9e-101 372.1 293 65.5
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.5e-100 370.2 286 66.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.9e-100 369.8 240 74.2
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 9.7e-100 367.5 284 66.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.2e-99 366.3 220 81.4
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 6.3e-99 364.8 286 66.1
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 8.2e-99 364.4 286 65.4
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.1e-98 364.0 254 71.7
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.4e-98 363.6 290 64.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 4.1e-98 362.1 290 64.8
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 5.3e-98 361.7 287 65.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 6.9e-98 361.3 288 66.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.4e-97 359.0 287 67.2
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 3.4e-97 359.0 245 71.4
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.5e-97 358.6 265 67.2
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 5.9e-97 358.2 285 64.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.7e-96 356.7 291 63.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.0e-96 355.1 275 68.7
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 8.5e-96 354.4 287 66.9
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.4e-95 353.6 231 74.9
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 1.9e-95 353.2 287 64.1
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 9.4e-95 350.9 287 65.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 9.4e-95 350.9 287 63.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 9.4e-95 350.9 287 63.8
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-94 350.1 287 63.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-93 347.1 290 63.1
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 6.7e-93 344.7 267 67.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.5e-92 343.6 309 60.2
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 5.7e-92 341.7 245 69.8
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.1e-90 335.9 296 61.1
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 9.1e-90 334.3 265 63.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.2e-89 334.0 290 61.4
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.9e-88 329.3 287 61.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.8e-88 328.9 284 61.6
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-86 323.6 266 63.2
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.6e-86 323.6 247 66.4
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.6e-86 323.6 244 66.4
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 7.9e-86 321.2 273 63.0
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 8.8e-85 317.8 267 57.7
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 6.5e-80 301.6 244 64.8
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.1e-79 300.8 183 79.2
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 8.2e-75 284.6 328 50.0
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 9.1e-74 281.2 222 59.0
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.3e-72 277.3 175 77.1
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.9e-72 276.2 231 56.3
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.1e-71 274.2 267 55.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.2e-68 264.2 170 73.5
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.2e-67 260.0 228 54.4
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.4e-66 256.5 229 54.1
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-63 246.5 265 50.9
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 8.0e-62 241.5 252 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 6.8e-61 238.4 274 47.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.3e-59 234.2 233 51.5
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.4e-58 228.8 167 69.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-56 223.8 237 55.7
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 5.0e-56 222.2 186 55.9
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.2e-52 211.1 229 52.8
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.0e-48 196.4 112 83.0
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.5e-39 167.5 130 66.2
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.2e-36 157.9 223 39.0
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 4.6e-33 146.0 112 63.4
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.3e-32 143.7 188 42.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 2.8e-30 136.7 133 51.1
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.6e-28 130.2 86 74.4
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-26 124.8 81 67.9
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-26 124.8 81 66.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 9.2e-26 121.7 81 66.7
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 8.6e-24 115.2 82 65.9
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 5.8e-20 102.4 102 53.9
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.6e-20 102.1 102 52.9
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.6e-20 102.1 102 52.9
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.9e-19 100.1 102 52.0
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.8e-19 99.8 102 52.0
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 4.2e-18 96.3 167 31.7
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 2.7e-17 93.6 98 54.1
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 7.8e-17 92.0 80 61.2
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.3e-16 91.3 197 31.0
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.3e-15 86.7 131 41.2
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 2.1e-14 84.0 104 49.0
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 6.9e-13 79.0 52 73.1
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.3e-11 74.7 54 66.7
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-11 74.3 60 65.0
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 7.9e-09 65.5 205 29.3


User provided reference genes

Program Settings