Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.3e-103 379.8 204 100.0
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.3e-103 379.8 204 100.0
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 3.2e-73 278.9 208 78.4
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 7.8e-72 274.2 203 80.3
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.5e-67 260.0 205 76.1
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 3.4e-67 258.8 206 73.3
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 1.7e-66 256.5 187 79.1
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 8.4e-66 254.2 187 77.0
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 7.1e-65 251.1 200 70.0
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 1.2e-64 250.4 187 75.4
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 4.6e-64 248.4 185 73.5
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 6.0e-64 248.1 204 69.6
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 1.0e-63 247.3 204 71.1
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 1.3e-63 246.9 186 75.3
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 1.7e-63 246.5 183 74.3
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 5.1e-63 245.0 166 78.9
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 8.7e-63 244.2 163 79.8
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 1.1e-62 243.8 161 78.9
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 1.1e-62 243.8 187 74.3
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 2.5e-62 242.7 168 79.8
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 2.5e-62 242.7 189 71.4
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 3.3e-62 242.3 161 80.1
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.3e-62 242.3 161 80.1
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 3.3e-62 242.3 204 68.1
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 4.3e-62 241.9 208 69.2
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 4.3e-62 241.9 178 74.7
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 7.4e-62 241.1 206 67.0
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 9.6e-62 240.7 208 68.3
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 9.6e-62 240.7 207 68.1
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 1.3e-61 240.4 207 69.1
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.6e-61 240.0 161 79.5
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.6e-61 240.0 195 72.3
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 2.8e-61 239.2 156 81.4
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 2.8e-61 239.2 187 69.5
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 2.8e-61 239.2 183 71.0
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 2.8e-61 239.2 189 71.4
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 4.8e-61 238.4 161 80.7
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 6.2e-61 238.0 167 78.4
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 1.1e-60 237.3 205 70.7
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.1e-60 237.3 188 69.7
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.1e-60 237.3 188 69.7
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.4e-60 236.9 161 80.7
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.4e-60 236.9 204 69.6
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 1.4e-60 236.9 189 72.5
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.8e-60 236.5 170 74.1
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 2.4e-60 236.1 163 79.1
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.4e-60 236.1 188 69.7
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 3.1e-60 235.7 206 65.5
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 4.0e-60 235.3 188 70.7
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 4.0e-60 235.3 204 68.1
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 5.3e-60 235.0 163 78.5
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 9.0e-60 234.2 203 66.0
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 1.2e-59 233.8 202 67.8
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 2.0e-59 233.0 176 75.0
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 2.0e-59 233.0 176 75.0
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.0e-59 233.0 206 69.4
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 3.4e-59 232.3 167 73.7
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 3.4e-59 232.3 193 67.4
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 3.4e-59 232.3 203 70.4
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 5.8e-59 231.5 204 67.2
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 7.6e-59 231.1 177 71.2
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.7e-58 229.9 204 67.6
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 3.8e-58 228.8 164 77.4
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 4.9e-58 228.4 162 75.3
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 6.4e-58 228.0 167 74.9
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 6.4e-58 228.0 166 75.3
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 6.4e-58 228.0 166 75.3
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 6.4e-58 228.0 203 66.0
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 8.4e-58 227.6 183 71.6
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 1.1e-57 227.3 190 66.3
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.1e-57 227.3 171 74.3
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.1e-57 227.3 151 80.8
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.1e-57 227.3 181 71.3
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 1.4e-57 226.9 166 74.7
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 1.9e-57 226.5 168 75.0
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 2.4e-57 226.1 210 63.8
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 2.4e-57 226.1 178 71.3
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 3.2e-57 225.7 169 71.6
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 4.2e-57 225.3 175 69.7
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 4.2e-57 225.3 187 69.5
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 5.5e-57 224.9 172 72.1
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 5.5e-57 224.9 172 72.1
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 7.1e-57 224.6 226 60.6
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 9.3e-57 224.2 169 72.8
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 1.2e-56 223.8 169 72.8
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 1.2e-56 223.8 156 76.9
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 2.1e-56 223.0 159 77.4
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 2.7e-56 222.6 207 68.6
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 4.6e-56 221.9 165 72.7
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 1.0e-55 220.7 180 71.1
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 1.0e-55 220.7 209 66.0
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 1.3e-55 220.3 203 66.0
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 2.3e-55 219.5 186 69.4
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 3.0e-55 219.2 186 71.0
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 5.1e-55 218.4 158 75.3
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 6.7e-55 218.0 189 66.1
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 2.5e-54 216.1 131 84.7
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 2.5e-54 216.1 191 66.0
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 1.3e-53 213.8 191 65.4
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 1.8e-52 209.9 166 71.7
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.2e-48 197.2 153 70.6
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 2.7e-48 196.1 189 63.0
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 3.0e-47 192.6 154 69.5
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 8.7e-47 191.0 132 74.2
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 2.5e-46 189.5 118 88.1
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 7.4e-46 188.0 204 55.9
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 6.9e-44 181.4 118 81.4
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 6.9e-44 181.4 151 64.9
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 9.0e-44 181.0 118 78.0
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 1.5e-43 180.3 149 64.4
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 2.6e-43 179.5 129 75.2
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 7.6e-43 177.9 116 81.0
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 7.9e-40 167.9 162 57.4
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 1.0e-39 167.5 108 79.6
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 4.3e-38 162.2 130 64.6
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 1.4e-33 147.1 146 54.8
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 3.2e-33 146.0 126 66.7
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 9.4e-33 144.4 157 56.7
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 1.6e-32 143.7 133 60.2
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 4.3e-30 135.6 86 83.7
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 9.7e-30 134.4 86 83.7
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.7e-29 133.7 86 82.6
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 7.7e-27 124.8 146 54.8
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 8.5e-26 121.3 92 72.8
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 9.4e-25 117.9 86 73.3
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 9.7e-22 107.8 86 68.6
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 2.2e-21 106.7 82 69.5
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 5.5e-17 92.0 57 75.4
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.7e-08 63.2 105 36.2
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 3.4e-06 56.2 116 34.5


User provided reference genes

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