Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012572 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 2.1e-39 165.2 82 100.0
CSS0005897 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 6.2e-12 73.9 34 100.0
Actinidia24133 Actinidia chinensis HOM05D004827 ORTHO05D005395 1.4e-11 72.8 34 97.1
CSS0040325 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 3.1e-11 71.6 36 91.7
Rhsim13G0099200 Rhododendron simsii HOM05D004827 ORTHO05D005395 6.9e-11 70.5 34 97.1
CSS0024800 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 9.0e-11 70.1 34 94.1
Manes.04G014900 Manihot esculenta HOM05D004827 ORTHO05D005395 9.0e-11 70.1 34 94.1
Prupe.6G109100 Prunus persica HOM05D004827 ORTHO05D005395 2.6e-10 68.6 34 88.2
vmacro03268 Vaccinium macrocarpon HOM05D004827 ORTHO05D005395 2.6e-10 68.6 34 91.2
Haze_23732 Corylus avellana HOM05D004827 ORTHO05D005395 3.4e-10 68.2 34 88.2
Nn6g35282 Nelumbo nucifera HOM05D004827 ORTHO05D005395 4.5e-10 67.8 34 91.2
MELO3C004950.2 Cucumis melo HOM05D004827 ORTHO05D005395 5.8e-10 67.4 34 91.2
A06p05180 Brassica napus HOM05D004827 ORTHO05D005395 7.6e-10 67.0 36 83.3
CsaV3_1G013530 Cucumis sativus L. HOM05D004827 ORTHO05D005395 7.6e-10 67.0 34 88.2
TPR.G6148 Trifolium pratense HOM05D004827 ORTHO05D005395 7.6e-10 67.0 34 88.2
CARHR007920 Cardamine hirsuta HOM05D004827 ORTHO05D005395 1.0e-09 66.6 34 88.2
Dinv34726 Davidia involucrata HOM05D004827 ORTHO05D005395 1.0e-09 66.6 34 88.2
PGR102G0165 Punica granatum HOM05D004827 ORTHO05D005395 1.0e-09 66.6 34 88.2
Sc15g0001580 Simmondsia chinensis HOM05D004827 ORTHO05D005395 1.0e-09 66.6 34 85.3
CANSAT78G0379 Cannabis sativa HOM05D004827 ORTHO05D005395 1.3e-09 66.2 33 87.9
ClCG03G002770 Citrullus lanatus HOM05D004827 ORTHO05D005395 1.3e-09 66.2 38 78.9
Potri.009G007200 Populus trichocarpa HOM05D004827 ORTHO05D005395 1.3e-09 66.2 34 88.2
Sabra09G0004200 Salix brachista HOM05D004827 ORTHO05D005395 1.3e-09 66.2 34 88.2
Hund01469 Selenicereus undatus HOM05D004827 ORTHO05D005395 1.3e-09 66.2 34 85.3
AL1G18470 Arabidopsis lyrata HOM05D004827 ORTHO05D005395 1.7e-09 65.9 34 88.2
AT1G08110 Arabidopsis thaliana HOM05D004827 ORTHO05D005395 1.7e-09 65.9 34 88.2
Carub.0001s0746 Capsella rubella HOM05D004827 ORTHO05D005395 1.7e-09 65.9 34 88.2
Thhalv10008645m.g Eutrema salsugineum HOM05D004827 ORTHO05D005395 1.7e-09 65.9 34 88.2
MD00G1032700 Malus domestica HOM05D004827 ORTHO05D005395 1.7e-09 65.9 34 85.3
Sp1g06750 Schrenkiella parvula HOM05D004827 ORTHO05D005395 1.7e-09 65.9 34 88.2
MD11G1146100 Malus domestica HOM05D004827 ORTHO05D005395 2.2e-09 65.5 34 85.3
PSO339G5318 Papaver somniferum HOM05D004827 ORTHO05D005395 2.2e-09 65.5 34 82.4
RcHm_v2.0_Chr5g0057571 Rosa chinensis HOM05D004827 ORTHO05D005395 2.2e-09 65.5 34 85.3
BcaB07g34053 Brassica carinata HOM05D004827 ORTHO05D005395 2.9e-09 65.1 34 85.3
RcHm_v2.0_Chr5g0057511 Rosa chinensis HOM05D004827 ORTHO05D005395 2.9e-09 65.1 34 85.3
TAR633G0460 Trochodendron aralioides HOM05D004827 ORTHO05D005395 2.9e-09 65.1 34 85.3
Atru.chr3.3541 Acer truncatum HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
BcaC05g24729 Brassica carinata HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
C05p06230 Brassica napus HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
BolC5t29377H Brassica oleracea HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
BraA06t23724Z Brassica rapa HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
CiPaw.13G119600 Carya illinoinensis HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 82.4
Medtr4g057685 Medicago truncatula HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
SEGI_26473 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 3.8e-09 64.7 34 85.3
Psat0s3927g0040 Pisum sativum HOM05D004827 ORTHO05D005395 5.0e-09 64.3 33 84.8
Sed0007609 Sechium edule HOM05D004827 ORTHO05D005395 5.0e-09 64.3 34 85.3
EL10Ac9g22587 Beta vulgaris HOM05D004827 ORTHO05D005395 6.5e-09 63.9 34 82.4
Ca_19305_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 6.5e-09 63.9 34 82.4
Glyma.11G194300 Glycine max HOM05D004827 ORTHO05D005395 6.5e-09 63.9 34 85.3
Gohir.A13G232600 Gossypium hirsutum HOM05D004827 ORTHO05D005395 6.5e-09 63.9 31 90.3
Gohir.D13G238300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 6.5e-09 63.9 31 90.3
Gorai.013G269200 Gossypium raimondii HOM05D004827 ORTHO05D005395 6.5e-09 63.9 31 90.3
Phvul.011G084400 Phaseolus vulgaris HOM05D004827 ORTHO05D005395 6.5e-09 63.9 34 85.3
Potri.004G214966 Populus trichocarpa HOM05D004827 ORTHO05D005395 6.5e-09 63.9 34 85.3
Thecc.09G349000 Theobroma cacao HOM05D004827 ORTHO05D005395 6.5e-09 63.9 34 85.3
Ah.01g003210 Amaranthus hybridus HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
arahy.Tifrunner.gnm1.ann1.PTJZ35 Arachis hypogaea HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
FvH4_3g30960 Fragaria vesca HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
FAN16G1413 Fragaria x ananassa HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
FAN21G3549 Fragaria x ananassa HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
TWI38G0398 Tripterygium wilfordii HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 85.3
HPP92_002620 Vanilla planifolia HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
HPP92_002675 Vanilla planifolia HOM05D004827 ORTHO05D005395 8.4e-09 63.5 34 82.4
Aa31sc241G20 Aethionema arabicum HOM05D004827 ORTHO05D005395 1.1e-08 63.2 34 82.4
BcaC01g02577 Brassica carinata HOM05D004827 ORTHO05D005395 1.1e-08 63.2 34 82.4
C03p63280 Brassica napus HOM05D004827 ORTHO05D005395 1.1e-08 63.2 34 82.4
C07p01580 Brassica napus HOM05D004827 ORTHO05D005395 1.1e-08 63.2 34 82.4
BolC3t18580H Brassica oleracea HOM05D004827 ORTHO05D005395 1.1e-08 63.2 34 82.4
Cc01_g10500 Coffea canephora HOM05D004827 ORTHO05D005395 1.4e-08 62.8 34 82.4
FAN25G1724 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.4e-08 62.8 31 87.1
Glyma.12G079700 Glycine max HOM05D004827 ORTHO05D005395 1.4e-08 62.8 34 82.4
PSO063G0803 Papaver somniferum HOM05D004827 ORTHO05D005395 1.9e-08 62.4 34 79.4
Os05g0295800 Oryza sativa ssp. japonica HOM05D004827 ORTHO05D005395 4.2e-08 61.2 34 79.4
QL01p015669 Quercus lobata HOM05D004827 ORTHO05D005395 4.2e-08 61.2 27 96.3
THA.LOC104800584 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 4.2e-08 61.2 34 82.4
Ah.01g003220 Amaranthus hybridus HOM05D004827 ORTHO05D005395 5.5e-08 60.8 34 79.4
COL.COLO4_11061 Corchorus olitorius HOM05D004827 ORTHO05D005395 5.5e-08 60.8 26 100.0
GSVIVG01031499001 Vitis vinifera HOM05D004827 ORTHO05D005395 5.5e-08 60.8 34 76.5
SalBow3G2012 Salvia bowleyana HOM05D004827 ORTHO05D005395 7.1e-08 60.5 33 81.8
BcaB07g34056 Brassica carinata HOM05D004827 ORTHO05D005395 9.3e-08 60.1 32 84.4
Lj3g0013572 Lotus japonicus HOM05D004827 ORTHO05D005395 1.2e-07 59.7 32 78.1
Lsat_1_v5_gn_1_62721 Lactuca sativa HOM05D004827 ORTHO05D005395 1.6e-07 59.3 27 92.6
Lj2A1013G28 Lonicera japonica HOM05D004827 ORTHO05D005395 1.6e-07 59.3 45 60.0
Lalb_Chr03g0027631 Lupinus albus HOM05D004827 ORTHO05D005395 1.6e-07 59.3 34 76.5
Duzib150G1276 Durio zibethinus HOM05D004827 ORTHO05D005395 2.1e-07 58.9 34 76.5
Nitab4.5_0001442g0020 Nicotiana tabacum HOM05D004827 ORTHO05D005395 2.1e-07 58.9 36 72.2
PGSC0003DMG400008074 Solanum tuberosum HOM05D004827 ORTHO05D005395 2.1e-07 58.9 36 75.0
AUR62029203 Chenopodium quinoa HOM05D004827 ORTHO05D005395 2.7e-07 58.5 34 76.5
VMungo1127G2270 Vigna mungo HOM05D004827 ORTHO05D005395 2.7e-07 58.5 31 80.6
THA.LOC104808316 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 3.5e-07 58.2 28 89.3
AUR62029205 Chenopodium quinoa HOM05D004827 ORTHO05D005395 4.6e-07 57.8 34 76.5
Cpa.g.sc65.38 Carica papaya HOM05D004827 ORTHO05D005395 6.1e-07 57.4 34 73.5
CDE06G2782 Ceratophyllum demersum HOM05D004827 ORTHO05D005395 6.1e-07 57.4 34 79.4
AUR62014938 Chenopodium quinoa HOM05D004827 ORTHO05D005395 6.1e-07 57.4 27 92.6
Nitab4.5_0004993g0010 Nicotiana tabacum HOM05D004827 ORTHO05D005395 6.1e-07 57.4 36 72.2
Solyc11g069040.3 Solanum lycopersicum HOM05D004827 ORTHO05D005395 7.9e-07 57.0 36 72.2
Sopen11g027750 Solanum pennellii HOM05D004827 ORTHO05D005395 7.9e-07 57.0 36 72.2
Aqoxy1G01146 Aquilegia oxysepala HOM05D004827 ORTHO05D005395 1.0e-06 56.6 30 83.3
CAN.G546.14 Capsicum annuum HOM05D004827 ORTHO05D005395 1.0e-06 56.6 36 72.2
Ciclev10029169m.g Citrus clementina HOM05D004827 ORTHO05D005395 1.0e-06 56.6 26 88.5
HanXRQChr01g0019511 Helianthus annuus HOM05D004827 ORTHO05D005395 1.0e-06 56.6 32 75.0
SMO353G0047 Selaginella moellendorffii HOM05D004827 ORTHO05D005395 1.3e-06 56.2 34 70.6
SGA_v2.0_scaffold263G45967 Striga asiatica HOM05D004827 ORTHO05D005395 1.3e-06 56.2 33 72.7
MSTRG.17890 Avicennia marina HOM05D004827 ORTHO05D005395 1.8e-06 55.8 33 69.7
HanXRQChr11g0346211 Helianthus annuus HOM05D004827 ORTHO05D005395 1.8e-06 55.8 32 75.0
Mapoly0033s0085 Marchantia polymorpha HOM05D004827 ORTHO05D005395 2.3e-06 55.5 30 76.7
Migut.D02265 Erythranthe guttata HOM05D004827 ORTHO05D005395 3.0e-06 55.1 33 72.7
Glyma.11G194200 Glycine max HOM05D004827 ORTHO05D005395 3.9e-06 54.7 32 65.6
Oeu018368.2 Olea europaea HOM05D004827 ORTHO05D005395 3.9e-06 54.7 32 75.0
Zm00001eb086540 Zea mays HOM05D004827 ORTHO05D005395 3.9e-06 54.7 31 77.4
MSTRG.21095 Avicennia marina HOM05D004827 ORTHO05D005395 5.1e-06 54.3 33 66.7
Peaxi162Scf00682g00012 Petunia axillaris HOM05D004827 ORTHO05D005395 5.1e-06 54.3 27 85.2
Duzib170G0342 Durio zibethinus HOM05D004827 ORTHO05D005395 6.7e-06 53.9 31 77.4
ECA248G1504 Erigeron canadensis HOM05D004827 ORTHO05D005395 6.7e-06 53.9 32 71.9
Mapoly0033s0083 Marchantia polymorpha HOM05D004827 ORTHO05D005395 6.7e-06 53.9 30 73.3


User provided reference genes

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