Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.9e-98 360.9 188 100.0
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.9e-74 281.2 165 86.1
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.0e-73 280.4 181 79.6
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-72 276.9 166 84.9
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-72 276.9 166 84.9
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.1e-72 276.9 179 78.2
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.5e-72 276.6 166 83.7
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.5e-72 275.8 166 83.1
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.2e-71 273.5 164 82.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.0e-70 268.5 163 83.4
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.0e-69 266.2 164 79.9
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.0e-69 266.2 164 79.9
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 5.7e-69 264.6 162 81.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 9.8e-69 263.8 164 79.3
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.7e-68 263.1 167 81.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 3.7e-68 261.9 166 77.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 6.3e-68 261.2 164 78.7
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.1e-67 258.5 164 78.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 7.0e-67 257.7 163 79.1
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.6e-66 256.5 163 76.7
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.7e-66 255.8 164 77.4
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.7e-66 255.8 164 77.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 3.5e-66 255.4 164 77.4
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 7.7e-66 254.2 180 70.6
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.0e-65 253.8 161 75.8
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.8e-65 251.9 164 75.6
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-64 250.4 165 75.2
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.5e-64 250.0 164 75.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.5e-64 250.0 162 75.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.9e-64 249.6 160 76.2
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.2e-64 248.8 166 75.3
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 4.2e-64 248.4 166 72.9
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.2e-64 248.4 166 75.3
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.5e-64 248.1 166 75.3
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 7.2e-64 247.7 164 74.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.2e-63 246.9 166 72.3
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.1e-63 246.1 166 74.1
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.8e-63 245.7 164 72.6
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.8e-63 245.7 164 73.8
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 3.6e-63 245.4 160 80.0
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 4.7e-63 245.0 168 74.4
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.7e-63 245.0 166 74.1
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 6.1e-63 244.6 164 72.6
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 6.1e-63 244.6 160 78.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.0e-63 244.2 166 74.7
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 8.0e-63 244.2 167 73.7
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.0e-62 243.8 162 72.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.4e-62 243.4 160 73.1
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.4e-62 243.4 162 72.8
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.8e-62 243.0 162 72.8
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 3.0e-62 242.3 164 71.3
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.0e-62 242.3 167 73.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.2e-62 241.5 167 71.9
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 5.2e-62 241.5 162 71.6
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 8.8e-62 240.7 159 73.0
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-61 240.4 165 71.5
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-61 240.4 165 71.5
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.2e-61 240.4 180 67.2
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.2e-61 240.4 166 72.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.0e-61 239.6 160 76.9
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.0e-61 239.6 156 75.0
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.6e-61 239.2 175 69.1
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.4e-61 238.8 164 70.7
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 4.4e-61 238.4 171 69.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 9.8e-61 237.3 171 70.2
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.3e-60 236.9 159 73.0
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.7e-60 236.5 156 75.6
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.7e-60 236.5 163 69.3
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 4.9e-60 235.0 166 71.1
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 8.3e-60 234.2 163 69.3
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.1e-59 233.8 163 69.3
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.1e-59 232.3 170 67.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 4.1e-59 231.9 163 71.2
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.4e-59 231.5 163 71.2
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 5.4e-59 231.5 180 65.6
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 9.2e-59 230.7 164 71.3
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 9.2e-59 230.7 159 74.2
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.5e-58 228.4 164 69.5
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.7e-57 226.5 166 70.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.9e-57 225.7 166 69.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.9e-57 225.7 178 68.5
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.9e-57 225.7 160 73.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 5.0e-57 224.9 163 69.3
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.6e-57 224.2 164 69.5
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.1e-56 223.8 163 69.9
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.1e-56 223.8 180 67.8
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.5e-56 223.4 162 69.8
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.9e-56 223.0 163 71.2
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.9e-56 223.0 159 71.1
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.5e-56 222.6 163 69.3
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.5e-56 222.6 163 69.3
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.6e-56 221.5 180 61.7
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.3e-56 221.1 160 71.9
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 9.5e-56 220.7 164 68.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.2e-55 220.3 163 69.3
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.6e-55 219.9 160 71.2
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-55 219.9 160 71.2
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.1e-55 219.5 164 68.3
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.1e-55 219.5 163 69.9
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.7e-55 218.4 166 66.9
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.7e-55 218.4 199 58.3
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.7e-55 218.4 163 67.5
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 6.1e-55 218.0 164 67.7
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.0e-55 217.6 164 68.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 8.0e-55 217.6 164 68.3
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 8.0e-55 217.6 165 64.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.0e-55 217.6 160 70.6
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.4e-54 216.9 163 68.1
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.4e-54 216.9 195 59.5
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.8e-54 216.5 163 67.5
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 3.0e-54 215.7 163 67.5
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.0e-54 215.7 160 70.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 4.0e-54 215.3 163 67.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.0e-54 215.3 162 67.3
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.2e-54 214.9 111 100.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 8.9e-54 214.2 159 66.7
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.5e-53 213.4 177 65.5
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.4e-53 212.2 157 68.8
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 4.4e-53 211.8 163 66.9
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 5.7e-53 211.5 159 69.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 7.5e-53 211.1 159 68.6
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 7.5e-53 211.1 170 65.9
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 9.8e-53 210.7 157 68.8
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 9.8e-53 210.7 160 63.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.3e-52 210.3 164 65.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-52 209.5 156 68.6
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.2e-52 209.5 168 66.1
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 4.9e-52 208.4 155 65.8
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 6.4e-52 208.0 156 66.0
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.2e-51 205.7 163 62.6
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.0e-50 203.0 180 60.0
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 4.6e-50 201.8 154 63.6
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 7.8e-50 201.1 166 62.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.3e-49 199.5 124 82.3
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.9e-49 198.7 142 68.3
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 8.0e-47 191.0 163 62.6
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.1e-46 189.1 129 72.9
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 7.5e-45 184.5 133 67.7
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-43 180.3 125 71.2
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 6.0e-42 174.9 130 67.7
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.9e-41 172.2 113 77.9
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 8.6e-41 171.0 125 73.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 2.6e-37 159.5 113 71.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 9.9e-37 157.5 147 55.8
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 3.7e-36 155.6 109 76.1
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.1e-33 145.2 112 67.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.3e-32 142.5 88 84.1
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 9.5e-32 141.0 121 62.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.2e-29 134.0 165 42.4
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.2e-29 134.0 126 54.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.0e-29 133.3 163 44.2
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.4e-29 132.5 128 50.8
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 6.4e-28 128.3 126 50.8
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.4e-27 126.3 110 62.7
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.2e-27 125.9 160 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.1e-27 125.6 164 42.1
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.0e-25 120.9 162 40.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 3.3e-24 115.9 104 53.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.6e-23 113.6 161 38.5
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.6e-23 112.5 108 58.3
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.2e-23 111.7 165 37.6
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.1e-23 111.3 71 80.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 9.6e-16 87.8 145 35.2
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.1e-10 70.1 64 60.9
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-06 57.8 93 37.6


User provided reference genes

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