Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.9e-262 906.7 455 100.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.4e-184 648.7 468 72.0
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.8e-184 647.9 470 71.7
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.7e-175 619.8 458 69.4
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 4.9e-175 618.2 450 71.6
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 5.7e-163 578.2 533 60.4
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 4.1e-153 545.4 461 64.4
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 7.7e-152 541.2 479 60.3
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 4.2e-150 535.4 454 61.0
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.5e-150 535.0 467 59.3
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 3.6e-149 532.3 466 60.7
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.3e-148 529.6 467 60.4
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.3e-148 529.6 460 59.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.0e-148 529.3 455 60.4
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 8.8e-148 527.7 463 59.0
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.1e-147 527.3 461 64.2
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 3.3e-147 525.8 464 58.8
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.1e-145 520.8 467 58.7
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.4e-145 520.4 484 57.9
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 3.1e-145 519.2 464 59.1
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.2e-144 517.3 469 58.8
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.5e-144 516.9 476 55.5
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.5e-144 515.4 460 58.7
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.2e-143 513.1 598 52.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.6e-141 506.9 479 56.4
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.7e-141 506.1 447 58.6
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 4.7e-141 505.4 470 56.8
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 6.1e-141 505.0 469 58.0
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.0e-140 504.2 466 60.7
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.0e-140 504.2 472 57.0
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 3.9e-140 502.3 451 57.6
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 3.3e-139 499.2 464 57.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.7e-139 497.7 454 60.1
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 9.7e-139 497.7 461 57.7
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.3e-138 495.0 464 56.2
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 8.2e-138 494.6 464 56.5
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.8e-137 493.4 464 56.9
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.0e-136 490.0 468 56.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.5e-136 489.2 449 58.4
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.0e-135 487.6 461 57.7
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.2e-135 486.5 462 56.7
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 5.0e-135 485.3 455 58.5
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 6.5e-135 485.0 465 57.8
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.5e-134 483.8 434 58.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.5e-134 483.8 465 57.2
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.9e-134 483.4 455 58.9
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 2.5e-134 483.0 462 57.6
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 3.2e-134 482.6 481 52.6
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 3.2e-134 482.6 434 58.3
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 3.2e-134 482.6 446 56.3
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.7e-133 479.6 450 56.7
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.6e-133 479.2 461 55.7
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 5.2e-132 475.3 446 55.8
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.5e-131 473.8 446 54.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.5e-131 473.8 467 53.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.6e-131 473.0 446 54.5
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 7.5e-131 471.5 446 56.1
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.7e-131 471.1 446 54.3
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.7e-130 470.3 456 52.9
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.8e-130 469.5 457 54.7
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.7e-130 469.2 411 58.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.8e-130 468.8 455 54.7
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 6.3e-130 468.4 424 56.6
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 6.3e-130 468.4 452 54.0
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 8.2e-130 468.0 464 52.6
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.1e-129 467.6 455 54.9
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.4e-129 467.2 460 54.6
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-129 467.2 452 53.8
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-129 466.8 457 53.6
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 5.3e-129 465.3 463 55.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 9.1e-129 464.5 454 55.3
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 2.0e-128 463.4 481 50.9
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 2.7e-128 463.0 446 54.0
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 3.5e-128 462.6 480 51.0
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.5e-128 462.6 463 55.3
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.5e-128 462.2 459 52.5
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.3e-127 460.7 338 71.6
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.5e-126 457.2 443 52.8
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.2e-126 455.7 443 52.6
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.2e-126 455.7 454 55.1
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 9.4e-126 454.5 450 54.4
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.1e-125 453.4 443 52.4
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.3e-124 449.9 445 53.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-124 449.5 446 54.9
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 4.0e-124 449.1 453 54.5
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-123 447.2 443 54.2
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 3.7e-122 442.6 446 54.5
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.8e-122 442.2 432 55.3
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.4e-121 440.7 449 53.9
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.4e-121 439.9 449 53.9
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 7.0e-121 438.3 449 53.7
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 9.1e-121 438.0 463 53.1
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.2e-120 437.6 486 50.6
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.5e-118 429.9 470 50.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.8e-116 423.7 443 53.5
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.3e-116 423.3 600 42.3
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 9.8e-115 417.9 467 52.5
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 3.7e-114 416.0 464 51.1
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.1e-113 414.5 434 49.3
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 5.9e-112 408.7 456 50.9
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 3.3e-110 402.9 461 47.7
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 9.5e-110 401.4 451 51.2
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 9.5e-110 401.4 379 55.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.8e-109 399.8 461 49.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 3.6e-109 399.4 360 58.1
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 3.6e-109 399.4 417 53.7
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.3e-108 396.7 455 47.7
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 6.8e-108 395.2 456 50.0
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.6e-107 393.3 455 49.7
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 6.4e-106 388.7 442 50.0
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.4e-105 387.5 446 48.2
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.5e-102 376.7 296 63.9
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 7.5e-99 365.2 267 66.7
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.7e-95 354.0 263 66.5
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-94 351.3 269 64.7
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-94 351.3 269 64.7
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-93 347.4 348 56.6
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 6.2e-93 345.5 424 47.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.9e-89 334.0 265 64.5
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.1e-85 320.5 260 62.7
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 4.4e-83 312.8 460 40.9
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.4e-81 307.8 462 42.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.6e-77 294.3 465 39.6
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 8.1e-77 292.0 437 41.4
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-74 284.6 408 41.4
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 3.7e-53 213.4 458 35.2
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.4e-52 210.7 456 34.4
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 5.8e-51 206.1 231 51.9
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.0e-50 205.3 136 74.3
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 4.9e-50 203.0 231 51.1
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-48 198.0 445 32.4
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 9.7e-46 188.7 461 30.4
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.3e-45 188.3 217 45.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.3e-45 188.3 455 31.9
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 6.3e-45 186.0 316 39.2
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.9e-42 177.2 313 39.3
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.2e-40 171.8 224 47.8
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 9.7e-38 162.2 138 61.6
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.3e-34 151.8 444 28.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.2e-29 134.4 427 28.8
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.0e-28 129.4 246 34.1
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 2.0e-27 127.9 156 48.7
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.5e-27 126.7 106 60.4
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 7.7e-27 125.9 129 53.5
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 7.7e-27 125.9 129 53.5
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.0e-26 123.2 179 48.0
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.4e-25 119.0 175 45.7
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 2.1e-24 117.9 231 38.1
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.0e-23 115.5 121 55.4
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-22 112.1 79 65.8
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.5e-22 111.7 188 34.0
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 3.3e-22 110.5 224 31.2
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 9.7e-22 109.0 99 56.6
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-21 108.6 176 43.8
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.5e-17 94.4 287 27.2
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.2e-14 85.5 125 38.4
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-12 77.8 83 51.8
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-11 75.1 83 50.6
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.7e-11 72.8 69 55.1
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 8.5e-10 69.3 70 48.6
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-09 68.6 73 53.4
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 4.4e-06 57.0 123 38.2


User provided reference genes

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