Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 2.8e-215 751.9 441 100.0
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 1.2e-106 391.0 451 56.5
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 2.3e-84 317.0 449 52.1
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 5.3e-81 305.8 510 50.8
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 5.8e-80 302.4 450 54.0
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 3.5e-77 293.1 419 47.7
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 2.1e-74 283.9 491 45.2
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 3.6e-74 283.1 344 52.0
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 2.4e-70 270.4 458 46.3
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 2.7e-69 266.9 343 53.4
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 4.6e-69 266.2 490 43.5
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 1.1e-67 261.5 404 49.8
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 9.6e-67 258.5 348 53.7
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 3.7e-66 256.5 495 43.8
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 4.8e-66 256.1 461 44.7
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 8.1e-66 255.4 458 48.3
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 2.4e-65 253.8 295 53.9
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 3.1e-65 253.4 454 48.0
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 1.5e-64 251.1 445 47.2
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 1.5e-64 251.1 351 49.6
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 2.0e-64 250.8 442 47.5
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 5.8e-64 249.2 426 45.5
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 5.8e-64 249.2 426 45.5
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 7.6e-64 248.8 337 50.4
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 2.9e-63 246.9 418 47.1
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 3.8e-63 246.5 309 50.8
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 3.8e-63 246.5 449 46.5
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 1.4e-62 244.6 476 43.5
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 4.2e-62 243.0 382 50.0
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 2.7e-61 240.4 321 51.1
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 3.5e-61 240.0 338 49.7
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 1.0e-60 238.4 378 49.7
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 1.3e-60 238.0 315 53.0
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 3.0e-60 236.9 452 42.7
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 8.7e-60 235.3 504 41.7
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 3.3e-59 233.4 306 52.0
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 1.3e-58 231.5 350 51.1
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 2.1e-58 230.7 503 42.1
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 4.8e-58 229.6 308 51.3
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 1.1e-57 228.4 367 50.1
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 1.1e-57 228.4 347 49.6
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 3.1e-57 226.9 504 41.7
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 4.1e-57 226.5 493 41.0
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 5.3e-57 226.1 297 51.9
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 5.3e-57 226.1 345 51.3
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 5.3e-57 226.1 470 44.7
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 4.5e-56 223.0 382 45.0
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 4.5e-56 223.0 460 45.2
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 1.7e-55 221.1 350 50.3
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 2.9e-55 220.3 471 42.3
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 3.8e-55 219.9 373 45.0
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 3.8e-55 219.9 450 46.7
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 1.4e-54 218.0 304 50.7
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 2.5e-54 217.2 342 46.5
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 4.2e-54 216.5 465 41.5
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 4.2e-54 216.5 465 41.5
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 1.2e-53 214.9 442 46.4
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 1.6e-53 214.5 452 42.0
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 2.7e-53 213.8 402 44.8
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 4.6e-53 213.0 348 49.4
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 4.6e-53 213.0 473 36.8
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 6.1e-53 212.6 123 82.9
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 1.3e-52 211.5 293 48.1
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 1.3e-52 211.5 354 48.6
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 2.3e-52 210.7 293 47.1
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 2.3e-52 210.7 357 48.5
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 3.9e-52 209.9 526 39.2
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 6.7e-52 209.1 447 38.0
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 5.7e-51 206.1 456 45.8
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 9.7e-51 205.3 521 41.3
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 1.1e-49 201.8 315 47.0
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 7.7e-48 195.7 404 44.3
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 1.3e-47 194.9 300 48.0
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 1.7e-47 194.5 223 55.2
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 6.5e-47 192.6 242 49.2
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 1.4e-46 191.4 348 45.1
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 1.2e-45 188.3 311 45.3
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 1.0e-44 185.3 445 37.8
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 1.4e-44 184.9 359 44.0
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 8.8e-44 182.2 484 37.2
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 1.1e-43 181.8 453 39.7
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 1.5e-43 181.4 319 42.9
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 2.0e-43 181.0 111 79.3
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 6.3e-42 176.0 304 45.4
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 8.2e-42 175.6 460 38.9
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 6.9e-41 172.6 299 44.1
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 1.2e-40 171.8 347 41.8
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 1.2e-40 171.8 103 81.6
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 3.4e-40 170.2 296 45.9
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 4.5e-40 169.9 296 46.3
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 7.7e-40 169.1 296 45.9
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 1.9e-38 164.5 131 68.7
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 2.5e-38 164.1 103 78.6
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 5.5e-38 162.9 360 39.2
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 5.5e-38 162.9 99 79.8
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 5.5e-38 162.9 261 44.4
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 3.6e-37 160.2 357 41.5
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 3.6e-37 160.2 101 79.2
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 3.9e-36 156.8 100 78.0
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 3.3e-35 153.7 302 38.7
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 3.3e-35 153.7 298 38.9
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 1.5e-32 144.8 368 37.5
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 5.5e-30 136.3 286 38.1
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 1.8e-28 131.3 76 84.2
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 1.3e-26 125.2 438 30.1
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 9.1e-25 119.0 307 33.9
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 1.6e-24 118.2 298 36.2
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 5.9e-24 116.3 64 82.8
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 8.5e-23 112.5 126 49.2
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 1.1e-22 112.1 399 36.8
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 1.1e-22 112.1 487 32.2
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 3.6e-21 107.1 66 77.3
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 4.7e-21 106.7 199 43.2
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 4.0e-20 103.6 54 87.0
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 1.4e-17 95.1 54 83.3
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 1.2e-16 92.0 54 79.6
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 7.7e-16 89.4 66 62.1
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 1.7e-15 88.2 53 77.4
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 1.4e-09 68.6 250 32.0
Cre06.g278258 Chlamydomonas reinhardtii HOM05D006498 ORTHO05D006377 4.3e-06 57.0 100 38.0


User provided reference genes

Program Settings