Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 6.4e-29 130.2 71 100.0
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 6.0e-27 123.6 71 95.8
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 3.9e-26 120.9 71 95.8
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 2.6e-22 108.2 69 85.5
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 4.1e-20 100.9 70 80.0
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 3.0e-18 94.7 68 79.4
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 5.1e-18 94.0 69 75.4
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 1.9e-17 92.0 67 76.1
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 2.5e-17 91.7 70 72.9
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 2.5e-17 91.7 67 77.6
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 7.3e-17 90.1 70 75.7
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 9.5e-17 89.7 67 73.1
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 1.6e-16 89.0 70 71.4
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 2.1e-16 88.6 70 75.7
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 2.8e-16 88.2 67 73.1
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 4.7e-16 87.4 67 70.1
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 6.2e-16 87.0 68 77.9
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 6.2e-16 87.0 68 77.9
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 6.2e-16 87.0 68 75.0
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 6.2e-16 87.0 69 73.9
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 8.1e-16 86.7 72 70.8
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 1.8e-15 85.5 70 72.9
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 2.3e-15 85.1 70 75.7
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 3.1e-15 84.7 69 73.9
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 4.0e-15 84.3 70 71.4
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 5.2e-15 84.0 70 74.3
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 8.9e-15 83.2 69 75.4
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 1.2e-14 82.8 70 67.1
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 1.2e-14 82.8 68 67.6
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.5e-14 82.4 69 66.7
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 1.5e-14 82.4 66 69.7
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 2.0e-14 82.0 67 67.2
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 2.6e-14 81.6 68 70.6
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 3.4e-14 81.3 70 72.9
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 4.4e-14 80.9 70 64.3
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 4.4e-14 80.9 69 65.2
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 4.4e-14 80.9 68 70.6
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 5.8e-14 80.5 65 70.8
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 7.5e-14 80.1 70 64.3
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 9.9e-14 79.7 70 70.0
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 9.9e-14 79.7 70 65.7
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 2.2e-13 78.6 70 70.0
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 2.9e-13 78.2 70 72.9
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 2.9e-13 78.2 63 71.4
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 2.9e-13 78.2 70 67.1
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 3.7e-13 77.8 65 66.2
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 3.7e-13 77.8 69 69.6
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 3.7e-13 77.8 69 66.7
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 6.4e-13 77.0 68 66.2
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 6.4e-13 77.0 68 67.6
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 6.4e-13 77.0 70 67.1
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 6.4e-13 77.0 70 67.1
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 6.4e-13 77.0 68 67.6
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 8.3e-13 76.6 63 69.8
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 66.2
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 66.2
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 66.2
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 66.2
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 66.2
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 1.1e-12 76.3 70 65.7
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 65.7
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 1.4e-12 75.9 69 72.5
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 67.6
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 67.6
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 1.9e-12 75.5 68 64.7
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 1.9e-12 75.5 70 62.9
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.9e-12 75.5 70 62.9
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.9e-12 75.5 70 62.9
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.9e-12 75.5 70 62.9
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 1.9e-12 75.5 70 62.9
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 2.4e-12 75.1 68 64.7
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 4.1e-12 74.3 68 66.2
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 5.4e-12 73.9 70 61.4
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 5.4e-12 73.9 67 67.2
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 7.1e-12 73.6 68 63.2
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 1.2e-11 72.8 68 64.7
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 2.7e-11 71.6 70 62.9
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 4.6e-11 70.9 71 62.0
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 7.8e-11 70.1 69 69.6
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 1.9e-09 65.5 41 80.5
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 1.6e-08 62.4 69 55.1
Pp3c13_11150 Physcomitrium patens HOM05D007805 ORTHO05D009877 1.1e-07 59.7 71 50.7
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 2.4e-07 58.5 62 58.1
Potri.016G018650 Populus trichocarpa HOM05D007805 ORTHO05D009877 3.4e-06 54.7 70 54.3
Os04g0657900 Oryza sativa ssp. japonica HOM05D007805 ORTHO05D009877 5.8e-06 53.9 70 51.4


User provided reference genes

Program Settings