Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.7e-81 305.8 146 100.0
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.2e-71 273.1 146 87.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-71 273.1 146 87.7
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 8.1e-71 270.4 146 87.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.8e-70 269.2 146 85.6
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.4e-70 268.9 146 85.6
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 4.0e-70 268.1 146 85.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 4.0e-70 268.1 146 86.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 4.0e-70 268.1 146 84.9
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 4.0e-70 268.1 146 84.9
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.2e-69 266.5 146 84.2
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.0e-69 265.8 146 83.6
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 83.6
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.7e-68 262.7 150 84.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 6.4e-68 260.8 148 83.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 6.4e-68 260.8 146 82.9
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 8.4e-68 260.4 146 82.9
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 80.8
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-67 258.8 146 83.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.4e-67 258.8 146 82.9
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 3.2e-67 258.5 137 89.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 81.5
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 4.2e-67 258.1 146 81.5
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.4e-67 257.7 148 81.8
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 9.3e-67 256.9 146 81.5
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 9.3e-67 256.9 146 81.5
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.2e-66 256.5 146 80.1
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 82.9
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.1e-66 255.8 146 80.8
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 82.9
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 3.5e-66 255.0 146 80.1
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 3.5e-66 255.0 146 80.8
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.5e-66 255.0 147 81.6
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 81.0
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.0e-65 253.4 147 81.0
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.7e-65 252.7 147 80.3
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 79.5
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 5.1e-65 251.1 146 78.1
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.9e-64 249.2 146 79.5
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.5e-64 248.8 151 79.5
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.5e-64 248.8 148 80.4
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.3e-64 248.4 147 79.6
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 7.3e-64 247.3 147 77.6
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 9.6e-64 246.9 147 79.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.6e-64 246.9 147 77.6
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 80.1
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-63 246.5 116 98.3
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 2.1e-63 245.7 144 77.8
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 77.4
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 76.0
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 3.6e-63 245.0 143 76.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 78.8
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 78.9
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 78.9
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 6.2e-63 244.2 148 78.4
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 75.3
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 76.7
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 77.4
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 77.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 76.2
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 76.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 3.1e-62 241.9 150 78.7
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.1e-62 241.9 140 80.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 3.1e-62 241.9 146 77.4
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 76.7
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 76.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 75.3
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 78.8
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 76.0
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.0
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 147 75.5
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 75.7
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.7
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.5e-61 239.6 144 75.0
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 75.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.7
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.5e-61 239.6 148 76.4
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 77.4
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 78.4
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 76.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 73.3
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 77.7
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 4.5e-61 238.0 147 74.1
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 75.3
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 75.3
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 74.0
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.6e-61 237.3 146 74.7
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.6e-61 237.3 147 76.9
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-60 236.5 147 72.8
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.9e-60 235.3 146 74.0
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 3.8e-60 235.0 146 73.3
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 72.6
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.1e-59 233.4 147 74.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 73.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.2e-59 231.5 146 72.6
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.2e-59 231.5 149 73.2
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.7e-58 228.8 147 73.5
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.0e-58 227.6 132 80.3
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.9e-58 227.3 132 80.3
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 7.9e-58 227.3 132 80.3
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.0e-57 226.9 146 70.5
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-57 226.1 147 73.5
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.8e-57 226.1 147 73.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.8e-57 226.1 146 69.2
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.3e-57 225.7 140 72.9
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 3.0e-57 225.3 149 72.5
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 3.9e-57 224.9 147 72.8
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 3.9e-57 224.9 147 72.8
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.9e-57 224.9 149 71.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 70.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.3e-56 221.9 130 78.5
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-55 219.5 131 73.3
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.1e-55 219.2 146 71.2
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 2.1e-55 219.2 146 69.9
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.8e-55 218.8 125 79.2
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.7e-55 218.4 148 71.6
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.8e-55 218.0 150 74.7
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.1e-54 216.9 150 70.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.8e-54 216.1 146 67.1
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.1e-54 215.3 133 73.7
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 69.3
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 6.9e-54 214.2 147 72.1
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 9.0e-54 213.8 150 70.7
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 9.0e-54 213.8 147 68.7
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 7.6e-53 210.7 150 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 7.6e-53 210.7 150 68.0
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.8e-52 208.4 132 75.0
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 68.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-51 205.3 148 68.2
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 68.0
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 3.2e-51 205.3 148 68.2
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 68.0
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 3.2e-51 205.3 148 68.2
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 5.5e-51 204.5 150 70.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.1e-51 204.1 146 74.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 68.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.6e-50 203.0 146 65.8
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 2.1e-50 202.6 150 67.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 7.9e-50 200.7 146 66.4
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.3e-49 199.9 151 63.6
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 8.7e-49 197.2 123 73.2
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.9e-48 196.1 134 70.9
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 9.0e-46 187.2 146 65.8
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.5e-40 169.9 146 61.6
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 3.3e-40 168.7 101 73.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.2e-39 166.0 97 83.5
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 4.8e-39 164.9 101 73.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 8.5e-36 154.1 148 56.1
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 5.1e-33 144.8 122 59.0
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.8e-25 119.8 166 43.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 8.8e-25 117.5 68 82.4
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 4.4e-24 115.2 75 76.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 7.7e-21 104.4 127 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.5e-19 99.4 103 52.4
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 4.2e-11 72.0 99 38.4
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.2e-08 63.9 37 73.0
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 1.3e-07 60.5 78 41.0


User provided reference genes

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