Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 3.2e-214 748.0 350 100.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 7.6e-184 647.1 347 86.2
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 4.6e-173 611.3 347 79.8
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 5.1e-172 607.8 348 79.6
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 7.4e-171 604.0 347 78.4
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 5.3e-169 597.8 348 76.4
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 6.9e-169 597.4 347 77.8
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 2.2e-167 592.4 350 79.1
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 3.9e-164 581.6 348 75.3
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.5e-163 579.7 347 75.5
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 1.5e-163 579.7 344 75.9
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 2.0e-163 579.3 345 75.4
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 7.4e-163 577.4 349 75.4
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.1e-161 573.5 349 75.1
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.2e-160 570.1 344 75.3
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 2.9e-159 565.5 347 72.0
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 3.8e-159 565.1 346 72.8
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 6.5e-159 564.3 352 71.6
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 3.2e-158 562.0 344 73.8
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 3.2e-158 562.0 347 72.0
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.8e-156 556.2 347 71.5
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 8.8e-156 553.9 378 68.5
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 1.1e-155 553.5 339 72.9
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 2.6e-155 552.4 343 74.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.1e-153 547.0 347 71.5
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 9.1e-153 543.9 347 72.0
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 1.2e-152 543.5 381 65.4
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.6e-152 543.1 350 71.4
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 4.5e-152 541.6 341 73.3
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 2.2e-151 539.3 341 72.7
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.1e-150 537.0 343 69.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 2.5e-150 535.8 342 69.9
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 2.5e-150 535.8 343 70.6
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 9.4e-150 533.9 344 69.8
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 1.2e-149 533.5 350 69.7
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 2.1e-149 532.7 348 69.5
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 2.7e-149 532.3 350 69.4
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 1.4e-148 530.0 348 69.0
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.8e-148 529.6 344 71.5
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 2.3e-148 529.3 344 69.2
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 2.3e-148 529.3 349 70.5
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 5.2e-148 528.1 348 68.4
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.5e-147 526.6 346 69.9
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 2.6e-147 525.8 346 69.7
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 9.7e-147 523.9 350 69.1
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.3e-146 523.5 347 68.3
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 2.2e-146 522.7 358 67.0
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 3.1e-145 518.8 304 78.3
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.7e-143 513.1 343 69.4
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.8e-143 511.9 337 68.5
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.5e-139 500.0 345 64.1
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.1e-137 493.8 347 65.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 2.0e-136 489.6 300 72.3
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 3.5e-136 488.8 345 63.2
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 5.9e-136 488.0 345 64.6
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 5.9e-136 488.0 345 62.0
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.3e-135 486.9 345 63.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.7e-135 486.5 346 63.0
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 5.0e-135 485.0 345 62.3
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 1.9e-134 483.0 345 60.6
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.9e-134 483.0 345 60.6
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.6e-133 479.9 340 61.2
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.1e-133 478.0 335 64.2
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 2.0e-131 473.0 340 60.3
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 2.0e-131 473.0 340 60.3
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 4.9e-130 468.4 363 57.6
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 4.9e-130 468.4 348 63.2
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 1.4e-129 466.8 346 59.2
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 2.4e-129 466.1 363 57.3
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 8.6e-127 457.6 348 59.5
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 2.5e-126 456.1 346 62.7
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.3e-126 455.3 316 65.8
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 2.8e-125 452.6 288 72.9
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.2e-123 447.2 378 55.3
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 4.6e-120 435.3 262 76.3
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.2e-117 427.2 470 48.9
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 1.1e-116 424.1 346 56.4
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 4.0e-116 422.2 304 69.4
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 4.1e-113 412.1 275 68.7
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 3.9e-111 405.6 443 48.5
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 7.3e-110 401.4 294 64.6
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 4.0e-108 395.6 214 85.0
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 2.0e-107 393.3 258 70.2
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 3.3e-102 375.9 245 69.4
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 2.4e-100 369.8 284 59.2
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 3.1e-100 369.4 229 72.5
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.7e-98 363.6 199 82.4
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 9.0e-92 341.3 337 50.1
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 8.4e-90 334.7 308 56.8
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 7.1e-89 331.6 259 59.5
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 9.3e-89 331.3 261 60.9
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-88 330.9 263 60.5
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 3.5e-88 329.3 263 57.8
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 4.6e-80 302.4 264 55.7
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 5.3e-76 288.9 169 76.3
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.8e-71 273.9 305 48.2
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.2e-69 265.4 308 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 7.9e-64 248.4 347 36.9
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.8e-63 247.3 160 70.6
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-62 244.2 160 70.0
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.1e-60 238.0 362 37.3
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 2.0e-59 233.8 140 77.1
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 3.6e-48 196.4 109 82.6
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.8e-47 194.1 207 49.3
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 6.7e-47 192.2 252 42.9
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.5e-46 191.0 252 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 8.2e-45 185.3 303 34.7
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.2e-43 181.4 179 48.6
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 4.2e-41 172.9 105 76.2
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.4e-39 167.9 106 70.8
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 4.4e-38 162.9 193 44.6
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 9.7e-38 161.8 82 84.1
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.6e-35 154.5 122 63.9
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 2.9e-34 150.2 91 72.5
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 1.4e-31 141.4 351 28.5
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 5.3e-28 129.4 87 69.0
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 7.7e-27 125.6 80 67.5
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 2.7e-24 117.1 68 70.6
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 7.5e-22 109.0 78 61.5
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 9.1e-20 102.1 63 74.6
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 6.6e-18 95.9 146 37.0
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 4.7e-16 89.7 125 37.6
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 3.7e-13 80.1 106 45.3
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 6.3e-13 79.3 42 78.6
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 8.6e-10 68.9 54 53.7
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.4e-07 61.6 30 80.0


User provided reference genes

Program Settings