Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-96 356.3 173 100.0
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-68 263.5 168 79.2
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.9e-67 258.8 164 79.3
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.0e-64 250.4 168 75.6
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.0e-64 250.4 168 75.6
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 5.1e-64 248.1 160 76.9
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 2.5e-63 245.7 169 72.8
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 7.4e-63 244.2 166 74.1
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 9.6e-63 243.8 166 74.1
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 1.3e-62 243.4 164 73.8
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.6e-62 243.0 157 76.4
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 2.1e-62 242.7 160 75.6
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 3.7e-62 241.9 167 73.7
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 4.8e-62 241.5 169 72.2
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 4.8e-62 241.5 158 74.1
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 6.2e-62 241.1 156 75.6
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 6.2e-62 241.1 157 75.8
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 8.1e-62 240.7 160 75.0
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.1e-61 240.4 157 76.4
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 1.1e-61 240.4 157 75.8
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 1.8e-61 239.6 159 75.5
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 1.8e-61 239.6 160 75.0
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 2.4e-61 239.2 159 74.8
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 2.4e-61 239.2 158 74.1
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 2.4e-61 239.2 156 76.3
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 3.1e-61 238.8 168 72.0
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 3.1e-61 238.8 164 72.6
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 4.0e-61 238.4 169 72.2
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 4.0e-61 238.4 156 74.4
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 5.3e-61 238.0 169 71.0
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 5.3e-61 238.0 169 71.0
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 5.3e-61 238.0 158 74.7
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 6.9e-61 237.7 159 73.6
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 6.9e-61 237.7 164 69.5
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 6.9e-61 237.7 159 73.6
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 6.9e-61 237.7 166 72.3
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 9.0e-61 237.3 169 70.4
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 9.0e-61 237.3 161 73.9
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 9.0e-61 237.3 167 72.5
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 1.2e-60 236.9 156 74.4
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.5e-60 236.5 160 73.1
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 1.5e-60 236.5 163 71.2
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.5e-60 236.5 169 71.6
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 2.0e-60 236.1 158 74.7
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 2.0e-60 236.1 156 74.4
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.6e-60 235.7 160 73.8
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 4.5e-60 235.0 160 72.5
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 4.5e-60 235.0 156 75.0
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 4.5e-60 235.0 166 71.1
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 5.8e-60 234.6 161 70.2
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 5.8e-60 234.6 169 69.8
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 7.6e-60 234.2 154 74.7
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 1.0e-59 233.8 161 70.2
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 1.0e-59 233.8 161 70.2
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 1.0e-59 233.8 157 74.5
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 1.3e-59 233.4 169 70.4
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 2.2e-59 232.6 161 70.2
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.2e-59 232.6 160 71.9
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.9e-59 232.3 151 77.5
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 2.9e-59 232.3 157 71.3
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.9e-59 232.3 169 71.0
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 3.8e-59 231.9 156 72.4
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 3.8e-59 231.9 159 72.3
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.8e-59 231.9 159 72.3
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.8e-59 231.9 159 72.3
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.8e-59 231.9 159 72.3
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 3.8e-59 231.9 159 72.3
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 3.8e-59 231.9 169 69.2
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 3.8e-59 231.9 156 72.4
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 4.9e-59 231.5 156 73.1
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 6.5e-59 231.1 155 72.9
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 6.5e-59 231.1 161 69.6
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 6.5e-59 231.1 161 70.2
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 8.4e-59 230.7 156 71.8
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 8.4e-59 230.7 161 69.6
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 8.4e-59 230.7 161 69.6
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 8.4e-59 230.7 157 70.7
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 8.4e-59 230.7 155 74.2
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 1.1e-58 230.3 155 74.2
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 1.1e-58 230.3 164 72.6
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 1.9e-58 229.6 164 71.3
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 1.9e-58 229.6 154 73.4
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 2.5e-58 229.2 157 70.7
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 2.5e-58 229.2 162 71.0
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 3.2e-58 228.8 156 71.8
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.1e-58 227.6 159 71.7
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.1e-58 227.6 159 71.7
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 7.1e-58 227.6 167 68.9
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 1.2e-57 226.9 155 72.9
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 2.1e-57 226.1 155 72.3
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 4.6e-57 224.9 164 67.7
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 7.9e-57 224.2 155 71.6
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.0e-56 223.8 159 70.4
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 1.3e-56 223.4 158 70.9
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 2.3e-56 222.6 155 71.0
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 3.0e-56 222.2 153 73.2
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-55 219.9 159 69.2
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 1.6e-54 216.5 164 68.3
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 1.6e-54 216.5 182 61.5
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 6.2e-54 214.5 152 70.4
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.1e-53 213.8 146 73.3
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 5.3e-53 211.5 148 71.6
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 2.6e-52 209.1 139 74.8
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 2.6e-52 209.1 141 73.8
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 1.3e-51 206.8 140 75.0
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 4.2e-50 201.8 155 64.5
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 5.5e-50 201.4 153 63.4
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 2.7e-49 199.1 161 61.5
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 7.9e-49 197.6 138 70.3
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 1.0e-48 197.2 138 71.0
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 1.0e-48 197.2 138 71.0
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 1.0e-48 197.2 138 71.0
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 3.7e-46 188.7 154 60.4
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 1.3e-43 180.3 154 57.8
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-40 170.6 152 60.5
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 3.0e-40 169.1 156 51.3
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 3.7e-38 162.2 94 84.0
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 6.3e-38 161.4 130 66.2
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 6.3e-38 161.4 144 59.7
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 1.2e-36 157.1 104 73.1
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 3.8e-35 152.1 106 70.8
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 8.8e-32 141.0 109 62.4
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 7.4e-31 137.9 110 62.7
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 7.4e-31 137.9 110 62.7
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 9.7e-31 137.5 117 62.4
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 9.7e-31 137.5 110 62.7
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 4.8e-30 135.2 114 63.2
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.3e-30 134.8 98 72.4
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.2e-28 130.6 97 67.0
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 2.2e-27 126.3 106 62.3
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 2.2e-27 126.3 106 62.3
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 2.2e-27 126.3 106 62.3
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 1.1e-26 124.0 183 39.9
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 9.4e-26 120.9 118 57.6
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 9.4e-26 120.9 118 57.6
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.6e-25 119.0 91 70.3
A08p15940 Brassica napus HOM05D003336 ORTHO05D003807 6.1e-25 118.2 70 78.6
CSS0001716 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 9.7e-23 110.9 85 67.1
CSS0040178 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-22 110.5 85 67.1
CSS0007615 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.9e-20 101.7 53 88.7
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-19 100.9 56 83.9
MBI01_g10302_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 1.3e-19 100.5 79 62.0
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.9e-19 99.4 56 83.9
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 1.1e-18 97.4 88 60.2
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 1.9e-18 96.7 53 81.1
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 5.5e-18 95.1 53 81.1
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.6e-17 93.6 80 65.0
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.1e-17 91.7 102 52.0
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 2.6e-15 86.3 53 71.7
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.8e-14 82.0 66 68.2
CSS0049342 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.8e-11 72.4 61 65.6
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.5e-10 70.5 49 71.4
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.9e-10 70.1 87 47.1
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 7.2e-10 68.2 58 62.1
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 1.2e-09 67.4 39 79.5
Psat6g173760 Pisum sativum HOM05D003336 ORTHO05D003807 4.9e-06 55.5 52 55.8


User provided reference genes

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