Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.8e-166 589.3 333 100.0
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.0e-124 450.7 384 64.6
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.4e-123 446.8 385 69.1
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 8.2e-119 431.0 368 68.8
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.4e-118 430.3 396 66.2
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 9.0e-118 427.6 372 68.5
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.7e-116 423.3 329 67.8
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.2e-116 422.9 378 65.6
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.9e-115 419.9 380 63.4
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.2e-115 419.1 368 67.9
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-114 416.4 378 65.6
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-114 416.4 378 65.6
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.7e-114 416.0 392 65.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.6e-114 415.2 370 64.3
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 4.6e-114 415.2 370 64.9
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.8e-113 413.3 372 60.5
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.1e-113 411.8 372 60.5
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.5e-112 410.2 337 68.0
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 3.3e-112 409.1 373 59.5
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 4.3e-112 408.7 376 66.5
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.3e-111 407.1 389 63.2
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 2.2e-111 406.4 378 62.4
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.8e-111 406.0 362 64.6
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.8e-111 405.2 373 63.5
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 4.8e-111 405.2 365 64.7
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 4.8e-111 405.2 388 63.4
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.3e-111 404.8 364 62.4
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 8.2e-111 404.4 373 63.8
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 8.2e-111 404.4 380 62.1
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.1e-110 404.1 373 63.5
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 1.8e-110 403.3 370 60.3
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 2.4e-110 402.9 385 66.0
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.3e-110 401.7 365 65.2
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 6.9e-110 401.4 376 62.0
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 9.1e-110 401.0 371 64.2
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 9.1e-110 401.0 373 63.0
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.0e-109 399.8 375 63.2
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 5.9e-109 398.3 371 61.7
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 7.7e-109 397.9 359 64.3
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.0e-108 397.5 386 61.7
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.0e-108 397.5 365 63.0
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.3e-108 397.1 334 63.5
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.3e-108 397.1 366 64.2
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.7e-108 396.7 364 63.7
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 2.9e-108 396.0 369 58.8
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.8e-108 395.6 355 65.6
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 3.8e-108 395.6 370 58.4
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 5.0e-108 395.2 370 59.5
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 6.5e-108 394.8 365 63.6
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 6.5e-108 394.8 355 65.4
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.1e-107 394.0 361 62.6
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.1e-107 394.0 361 62.6
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.4e-107 393.7 379 64.1
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.9e-107 393.3 363 65.3
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 4.2e-107 392.1 347 66.3
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 4.2e-107 392.1 371 62.0
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 7.2e-107 391.3 382 59.7
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 7.2e-107 391.3 364 63.2
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 9.4e-107 391.0 343 66.2
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.2e-106 390.6 354 61.3
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.1e-106 389.8 349 61.6
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 2.7e-106 389.4 392 60.7
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 3.6e-106 389.0 353 66.3
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 4.7e-106 388.7 366 62.6
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 4.7e-106 388.7 363 59.8
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 4.7e-106 388.7 353 60.9
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 4.7e-106 388.7 353 66.6
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 7.9e-106 387.9 332 63.3
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 7.9e-106 387.9 350 61.4
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 2.3e-105 386.3 372 61.6
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 2.3e-105 386.3 355 62.5
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 3.0e-105 386.0 353 59.5
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.0e-105 386.0 300 67.0
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.1e-105 385.2 369 58.0
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 5.1e-105 385.2 355 63.1
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 6.7e-105 384.8 347 65.1
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 8.8e-105 384.4 352 66.5
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.1e-104 384.0 351 60.1
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.5e-104 383.6 346 65.3
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.5e-104 383.6 346 65.3
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.5e-104 383.6 315 64.8
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.5e-104 383.6 368 57.1
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 2.6e-104 382.9 347 64.6
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.6e-104 382.9 350 62.0
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 2.6e-104 382.9 368 65.2
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 2.6e-104 382.9 337 65.3
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 4.4e-104 382.1 352 66.5
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.4e-104 382.1 352 66.5
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 4.4e-104 382.1 378 57.1
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 5.7e-104 381.7 350 64.0
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 5.7e-104 381.7 368 56.5
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 7.4e-104 381.3 339 65.5
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 7.4e-104 381.3 347 64.8
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 7.4e-104 381.3 368 56.2
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 9.7e-104 380.9 342 65.2
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 9.7e-104 380.9 320 63.4
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 9.7e-104 380.9 312 64.4
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.3e-103 380.6 353 64.3
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.3e-103 380.6 385 55.1
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.7e-103 380.2 320 63.1
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.7e-103 380.2 368 58.7
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.8e-103 379.4 377 57.3
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 2.8e-103 379.4 385 54.5
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.7e-103 379.0 302 66.6
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 8.2e-103 377.9 356 57.3
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 1.1e-102 377.5 311 63.7
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.8e-102 376.7 367 62.4
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 2.4e-102 376.3 364 56.0
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.4e-102 376.3 317 63.7
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 4.1e-102 375.6 364 56.0
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 9.1e-102 374.4 301 64.8
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.5e-101 373.6 311 63.7
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 5.9e-101 371.7 330 59.7
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 7.7e-101 371.3 301 64.5
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.4e-99 367.1 394 52.5
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 9.4e-99 364.4 474 50.2
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.2e-98 364.0 301 62.5
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 8.0e-98 361.3 346 56.6
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.0e-96 356.7 361 55.7
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 1.7e-95 353.6 368 62.5
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.2e-95 353.2 359 56.3
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 3.7e-95 352.4 323 63.5
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 6.3e-95 351.7 310 60.3
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 8.2e-95 351.3 299 61.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 1.1e-94 350.9 365 55.6
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 1.4e-94 350.5 285 63.9
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.8e-92 342.4 267 68.5
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 2.5e-91 339.7 303 67.0
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.5e-91 339.7 335 62.1
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 5.5e-91 338.6 388 51.8
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 5.5e-91 338.6 268 64.9
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.8e-89 333.6 298 58.7
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 2.6e-88 329.7 336 52.1
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 7.5e-88 328.2 267 65.9
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 1.7e-84 317.0 294 63.9
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 3.8e-84 315.8 276 60.5
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 6.5e-84 315.1 299 53.2
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 6.5e-84 315.1 302 55.0
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.5e-83 313.9 313 60.1
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 7.2e-83 311.6 377 53.3
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.6e-82 309.3 334 50.9
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.4e-81 307.4 300 52.7
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.0e-81 306.2 366 52.7
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.5e-80 303.9 298 53.0
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 2.8e-79 299.7 398 48.7
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 3.5e-77 292.7 363 48.5
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.5e-77 292.7 239 64.0
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.1e-62 244.6 221 60.6
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.8e-61 238.4 241 55.6
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 3.3e-59 233.0 308 43.5
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.5e-56 224.2 160 73.1
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 8.6e-52 208.4 210 51.9
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 7.3e-51 205.3 139 70.5
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 8.3e-47 191.8 272 46.3
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 2.0e-40 170.6 200 49.0
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 3.5e-37 159.8 98 77.6
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 8.4e-31 138.7 92 76.1
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 6.0e-29 132.5 150 50.7
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 2.0e-24 117.5 100 61.0
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 1.9e-19 100.9 65 72.3
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 1.2e-16 91.7 59 72.9
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 1.2e-16 91.7 64 73.4
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 1.2e-16 91.7 64 73.4
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 1.0e-15 88.6 64 71.9
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.7e-15 87.8 73 61.6
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 2.5e-11 73.9 86 65.1
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 7.4e-11 72.4 87 66.7
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.1e-10 70.9 195 31.3
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.8e-09 67.8 132 34.8
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 6.5e-07 59.3 35 77.1
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 6.5e-07 59.3 41 68.3
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 8.4e-07 58.9 275 23.6
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 1.1e-06 58.5 41 65.9
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.4e-06 58.2 356 22.8
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 1.9e-06 57.8 39 69.2


User provided reference genes

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