Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.0e-207 726.5 368 100.0
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 8.2e-205 716.8 368 98.9
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 3.2e-172 608.6 371 83.6
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.3e-165 586.6 369 81.6
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.1e-164 583.6 369 82.9
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 9.2e-164 580.5 368 81.5
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 4.6e-163 578.2 371 80.9
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 6.0e-163 577.8 371 80.9
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 1.0e-162 577.0 375 82.7
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 2.3e-162 575.9 370 81.6
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 2.3e-162 575.9 370 80.0
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 8.6e-162 573.9 371 81.7
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 2.5e-161 572.4 370 80.0
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 3.3e-161 572.0 372 80.1
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 5.6e-161 571.2 397 78.6
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 1.1e-159 567.0 376 78.7
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.8e-159 566.2 378 79.4
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 4.0e-159 565.1 369 78.6
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 8.9e-159 563.9 374 79.1
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.0e-158 562.8 372 76.6
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 7.6e-158 560.8 372 78.5
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.8e-157 558.5 374 79.1
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 5.4e-156 554.7 385 77.1
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 7.1e-156 554.3 369 79.1
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.2e-155 553.5 367 77.9
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 1.6e-155 553.1 383 76.2
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 3.5e-155 552.0 365 79.2
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 4.6e-155 551.6 375 77.1
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 6.0e-155 551.2 356 81.2
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 1.7e-154 549.7 369 78.3
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 1.7e-154 549.7 374 76.5
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 2.3e-154 549.3 373 75.9
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 6.6e-154 547.7 365 79.5
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 8.7e-154 547.4 325 87.1
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 3.3e-153 545.4 377 77.2
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.6e-152 543.1 375 75.5
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 8.1e-152 540.8 372 75.5
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.1e-151 540.4 363 78.5
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.4e-151 540.0 375 77.1
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 1.4e-151 540.0 376 76.6
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.4e-151 540.0 375 77.1
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 1.4e-151 540.0 376 76.6
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.4e-151 540.0 376 76.6
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 1.8e-151 539.7 382 75.4
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.8e-151 539.7 368 78.0
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 2.4e-151 539.3 382 75.7
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 3.1e-151 538.9 340 82.1
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 4.0e-151 538.5 372 77.7
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 4.0e-151 538.5 371 77.1
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 4.0e-151 538.5 375 76.5
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 6.9e-151 537.7 373 76.9
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 2.6e-150 535.8 373 76.9
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 3.4e-150 535.4 377 75.1
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 7.6e-150 534.3 373 77.5
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 7.6e-150 534.3 366 76.8
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 2.2e-149 532.7 386 74.9
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.9e-148 529.6 370 77.3
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 2.4e-148 529.3 374 75.4
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 7.1e-148 527.7 367 76.0
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 9.3e-148 527.3 376 73.9
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.2e-147 526.9 367 76.0
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 1.6e-147 526.6 372 76.6
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 3.0e-146 522.3 372 74.2
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.6e-145 518.1 389 73.3
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.6e-144 516.5 389 73.0
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 2.1e-144 516.2 374 73.5
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 6.2e-144 514.6 408 68.1
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 8.1e-144 514.2 383 73.6
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.1e-143 513.8 377 72.1
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.1e-143 513.8 374 74.6
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.4e-143 513.5 368 76.1
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 9.0e-143 510.8 382 74.3
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 3.4e-142 508.8 357 73.9
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 4.5e-142 508.4 380 73.4
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 5.8e-142 508.1 370 75.4
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 2.2e-141 506.1 366 73.2
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 2.9e-141 505.8 368 72.8
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.4e-140 503.4 366 72.1
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 3.2e-140 502.3 367 73.3
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 4.2e-140 501.9 367 74.1
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 5.4e-140 501.5 368 72.0
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.1e-139 499.6 331 80.4
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 4.6e-139 498.4 342 76.6
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.8e-138 496.5 331 80.1
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 2.5e-137 492.7 366 71.0
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.8e-135 486.5 279 88.9
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 4.5e-134 481.9 324 79.0
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.8e-134 481.5 387 70.3
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 1.7e-133 479.9 393 67.2
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.7e-133 479.9 324 78.4
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 2.4e-132 476.1 385 67.0
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 3.2e-132 475.7 320 78.4
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 9.3e-132 474.2 367 67.3
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 9.3e-132 474.2 374 69.0
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 2.7e-131 472.6 383 67.6
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 2.7e-131 472.6 375 69.1
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 2.3e-130 469.5 361 68.4
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 3.0e-130 469.2 384 67.7
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 4.8e-128 461.8 331 73.7
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 6.7e-122 441.4 287 81.9
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 5.7e-121 438.3 343 69.7
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 4.5e-118 428.7 360 67.2
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 7.2e-116 421.4 287 75.3
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 2.7e-115 419.5 309 69.9
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 1.8e-111 406.8 290 71.4
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 2.1e-107 393.3 233 86.3
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 6.1e-107 391.7 327 63.0
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.2e-102 377.5 285 66.3
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 8.2e-96 354.8 299 62.9
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 3.1e-95 352.8 310 63.9
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 2.2e-93 346.7 206 84.0
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 3.1e-87 326.2 203 81.3
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 2.7e-83 313.2 283 58.3
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 4.0e-82 309.3 262 58.8
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.2e-81 307.8 243 69.1
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 1.6e-78 297.4 279 59.9
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 1.7e-77 293.9 263 55.9
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.5e-76 290.8 234 68.8
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 5.6e-68 262.3 189 69.8
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 4.9e-64 249.2 156 82.7
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.1e-63 248.1 187 71.1
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 7.8e-62 241.9 188 69.7
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 5.6e-60 235.7 179 69.3
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.1e-58 231.5 179 68.7
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 1.2e-51 208.0 203 57.1
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 3.4e-49 199.9 109 91.7
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 6.4e-48 195.7 116 85.3
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 5.4e-47 192.6 137 75.9
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.0e-37 161.8 114 69.3
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 2.7e-30 137.1 244 36.5
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 5.6e-28 129.4 255 33.7
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.5e-25 121.3 188 44.7
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 5.8e-25 119.4 158 44.9
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 1.9e-23 114.4 167 41.3
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 1.3e-21 108.2 110 58.2
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 1.8e-21 107.8 77 76.6
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 3.0e-21 107.1 84 59.5
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.0e-21 107.1 74 70.3
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 8.7e-21 105.5 241 30.3
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 3.7e-19 100.1 50 98.0


User provided reference genes

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