Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 7.3e-264 913.3 446 100.0
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 7.8e-234 813.5 443 88.0
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 6.0e-226 787.3 476 80.7
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 6.2e-223 777.3 444 82.7
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.1e-219 766.5 441 81.9
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 2.4e-219 765.4 444 81.5
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.6e-218 762.7 444 80.9
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.6e-218 762.7 444 81.1
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 2.1e-218 762.3 443 81.9
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 4.6e-218 761.1 436 81.9
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 6.0e-218 760.8 442 81.0
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.0e-218 760.8 445 81.3
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 3.0e-217 758.4 454 80.6
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.0e-217 758.4 445 81.1
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 7.4e-216 753.8 444 80.2
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.8e-215 751.9 444 80.2
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 3.7e-215 751.5 437 80.5
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 3.7e-215 751.5 445 81.1
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.7e-215 751.5 441 80.5
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 4.8e-215 751.1 442 80.1
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 5.3e-214 747.7 441 78.9
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 6.9e-214 747.3 444 80.0
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.5e-213 746.1 439 79.7
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.0e-213 745.7 441 80.0
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 2.6e-213 745.3 441 80.7
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 4.5e-213 744.6 442 79.9
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 4.5e-213 744.6 444 79.3
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 5.8e-213 744.2 444 77.9
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-212 742.7 442 81.7
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 8.4e-212 740.3 437 80.1
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.5e-211 738.8 444 77.5
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 4.2e-211 738.0 445 77.5
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 7.1e-211 737.3 442 79.6
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 7.9e-210 733.8 442 79.2
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.3e-208 728.0 437 78.3
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 4.8e-207 724.5 444 78.8
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 6.9e-206 720.7 437 78.0
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.2e-205 719.9 441 78.7
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 5.9e-205 717.6 441 77.1
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 7.7e-205 717.2 441 77.1
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-204 716.5 439 76.3
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.2e-203 711.4 444 76.6
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.2e-202 709.9 448 77.2
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.6e-202 709.5 464 76.3
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.1e-202 709.1 442 76.5
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.7e-202 708.8 435 77.9
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 3.6e-202 708.4 436 77.3
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.8e-201 706.1 444 75.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 6.7e-201 704.1 437 76.7
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 2.5e-200 702.2 441 77.3
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 5.7e-200 701.0 445 76.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 9.7e-200 700.3 446 74.9
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-199 699.9 440 75.2
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.2e-197 693.3 434 76.7
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 3.2e-195 685.3 462 71.2
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 5.5e-195 684.5 442 74.2
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 7.2e-195 684.1 443 72.7
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.7e-194 682.2 443 76.1
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 3.6e-194 681.8 420 79.5
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.0e-193 680.2 443 73.8
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.4e-193 679.9 437 75.1
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.7e-191 672.9 416 79.6
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.8e-191 672.2 441 73.9
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.7e-191 671.8 448 72.3
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.1e-190 670.2 434 74.9
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.8e-190 669.5 451 71.8
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.5e-189 666.4 404 75.7
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 2.6e-189 665.6 442 72.9
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.4e-185 653.3 442 70.8
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 2.9e-180 635.6 422 73.9
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.1e-179 633.6 465 69.5
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 2.5e-179 632.5 656 54.3
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.2e-179 632.1 387 78.6
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 4.7e-178 628.2 362 79.8
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.0e-178 627.5 387 78.3
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.8e-177 626.3 440 68.9
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 8.8e-177 624.0 411 73.5
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.2e-175 619.4 345 82.3
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 4.8e-175 618.2 444 70.5
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 9.1e-174 614.0 442 68.3
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 3.6e-170 602.1 447 68.7
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 4.2e-163 578.6 383 72.3
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 3.4e-160 568.9 353 77.1
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 4.9e-159 565.1 444 66.2
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.8e-158 563.1 352 77.0
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 2.3e-148 529.6 439 58.3
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 6.2e-146 521.5 391 67.0
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 4.0e-145 518.8 499 57.3
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.2e-144 517.3 443 58.5
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.5e-144 516.9 428 62.6
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.9e-143 512.7 384 70.8
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 2.1e-141 506.5 285 84.9
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.3e-140 503.8 434 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 9.5e-139 497.7 440 59.3
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.3e-137 493.0 442 57.2
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 6.8e-137 491.5 444 59.5
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 8.9e-137 491.1 439 56.7
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.5e-136 490.3 342 71.6
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 4.1e-134 482.3 280 82.5
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 8.6e-132 474.6 285 79.3
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.5e-131 473.8 279 81.4
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 2.2e-127 459.9 285 76.5
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.3e-124 450.7 447 55.7
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.9e-124 449.1 363 58.4
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.1e-117 426.8 286 72.4
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 7.8e-117 424.9 441 53.5
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.3e-116 424.1 444 54.5
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 4.2e-110 402.5 453 45.9
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.0e-108 397.9 407 53.6
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.3e-108 396.7 287 66.6
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 5.6e-107 392.1 420 52.4
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.8e-106 389.0 442 49.8
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.5e-102 376.7 212 83.0
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 2.7e-101 373.2 212 82.1
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 2.2e-87 327.0 345 49.0
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.7e-77 293.5 172 83.1
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.7e-77 293.5 172 83.1
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.8e-76 288.5 163 84.7
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.4e-70 268.5 152 81.6
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 1.2e-64 251.5 188 66.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.5e-64 249.6 152 74.3
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 8.5e-55 218.8 129 78.3
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.5e-54 218.0 126 80.2
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 4.7e-53 213.0 129 74.4
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 2.3e-52 210.7 127 78.0
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 5.9e-48 196.1 130 73.8
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 9.5e-46 188.7 123 66.7
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 4.0e-44 183.3 281 36.7
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 6.8e-44 182.6 175 58.3
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.0e-43 181.0 95 89.5
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 6.8e-36 156.0 105 70.5
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.5e-35 154.8 112 69.6
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.6e-32 143.3 96 66.7
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 8.1e-29 132.5 81 72.8
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 6.8e-28 129.4 108 58.3
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 1.2e-19 102.1 66 80.3
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 9.9e-19 99.0 63 81.0
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.9e-18 96.7 69 73.9
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.8e-16 89.4 45 88.9
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 7.8e-16 89.4 64 67.2
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 1.4e-12 78.6 48 68.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 2.9e-10 70.9 31 90.3


User provided reference genes

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