Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.6e-32 141.0 70 100.0
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.0e-31 139.4 70 98.6
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-27 125.9 66 92.4
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.3e-26 122.5 66 90.9
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.7e-26 122.1 66 92.4
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.8e-26 120.9 62 95.2
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 5.0e-26 120.6 62 95.2
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 8.5e-26 119.8 62 93.5
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.2e-25 117.9 62 91.9
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.2e-25 117.9 62 91.9
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.2e-25 117.5 61 93.4
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 5.5e-25 117.1 62 91.9
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 7.2e-25 116.7 61 91.8
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 7.2e-25 116.7 61 93.4
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.2e-25 116.7 61 93.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 9.4e-25 116.3 67 88.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.6e-24 115.5 61 90.2
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.6e-24 115.5 61 91.8
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.6e-24 115.5 61 91.8
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.6e-24 115.5 61 91.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.1e-24 115.2 62 88.7
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.1e-24 115.2 62 90.3
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 4.7e-24 114.0 61 90.2
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 6.1e-24 113.6 62 85.5
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 6.1e-24 113.6 62 88.7
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.0e-23 112.8 61 86.9
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.0e-23 112.8 62 85.5
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.4e-23 112.5 60 88.3
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.4e-23 112.5 67 80.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.4e-23 112.5 64 84.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.4e-23 112.5 61 86.9
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-23 112.5 61 85.2
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 2.3e-23 111.7 61 85.2
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.3e-23 111.7 61 85.2
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.3e-23 111.7 61 85.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 3.0e-23 111.3 61 85.2
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 3.0e-23 111.3 61 83.6
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.0e-23 111.3 61 85.2
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 3.9e-23 110.9 60 86.7
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 3.9e-23 110.9 62 83.9
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.9e-23 110.9 61 83.6
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 5.1e-23 110.5 61 85.2
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 5.1e-23 110.5 61 85.2
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 5.1e-23 110.5 61 83.6
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 5.1e-23 110.5 62 85.5
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 5.1e-23 110.5 61 85.2
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 6.7e-23 110.2 63 79.4
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 6.7e-23 110.2 61 85.2
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 6.7e-23 110.2 62 83.9
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 8.8e-23 109.8 63 79.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 8.8e-23 109.8 63 79.4
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.1e-22 109.4 61 83.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.1e-22 109.4 61 85.2
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.1e-22 109.4 63 79.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.1e-22 109.4 63 79.4
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.5e-22 109.0 62 82.3
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.5e-22 109.0 61 82.0
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 2.0e-22 108.6 61 83.6
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.0e-22 108.6 61 82.0
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.0e-22 108.6 60 85.0
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.6e-22 108.2 61 80.3
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.6e-22 108.2 59 86.4
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 3.3e-22 107.8 63 79.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.3e-22 107.8 62 80.6
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.3e-22 107.8 61 82.0
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.3e-22 107.8 62 82.3
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 4.4e-22 107.5 60 83.3
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.4e-22 107.5 61 78.7
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 4.4e-22 107.5 61 80.3
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 5.7e-22 107.1 62 79.0
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 5.7e-22 107.1 60 83.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 5.7e-22 107.1 60 83.3
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 5.7e-22 107.1 61 80.3
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 5.7e-22 107.1 61 80.3
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 7.4e-22 106.7 63 77.8
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 9.7e-22 106.3 61 78.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 9.7e-22 106.3 61 78.7
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.7e-22 106.3 61 77.0
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.3e-21 105.9 59 81.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 1.7e-21 105.5 61 77.0
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 1.7e-21 105.5 61 77.0
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.7e-21 104.4 59 79.7
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.7e-21 104.4 61 80.3
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.7e-21 104.4 61 78.7
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.8e-21 104.0 61 75.4
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 4.8e-21 104.0 63 71.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.8e-21 104.0 61 78.7
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.3e-21 103.6 62 75.8
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 8.2e-21 103.2 55 89.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-20 102.8 61 73.8
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.1e-20 102.8 61 77.0
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.1e-20 102.8 59 78.0
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.4e-20 102.4 60 78.3
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.8e-20 102.1 61 72.1
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.1e-20 100.9 61 72.1
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 4.1e-20 100.9 60 78.3
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 6.9e-20 100.1 54 85.2
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 6.9e-20 100.1 57 78.9
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 9.1e-20 99.8 59 76.3
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.5e-19 99.0 60 75.0
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.6e-19 98.2 61 72.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.6e-19 98.2 59 74.6
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 2.6e-19 98.2 61 73.8
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 2.6e-19 98.2 61 73.8
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.5e-19 97.4 61 70.5
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 4.5e-19 97.4 59 72.9
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 5.9e-19 97.1 63 68.3
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 5.9e-19 97.1 63 71.4
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 5.9e-19 97.1 59 72.9
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 7.7e-19 96.7 63 68.3
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.0e-18 96.3 61 72.1
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.7e-18 95.5 61 72.1
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 5.0e-18 94.0 61 68.9
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 5.0e-18 94.0 53 75.5
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 8.5e-18 93.2 61 67.2
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.4e-17 92.4 61 67.2
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.2e-17 90.9 61 65.6
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 7.2e-17 90.1 53 75.5
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.6e-16 89.0 60 66.7
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.6e-16 89.0 60 66.7
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.6e-16 89.0 59 64.4
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.7e-16 87.4 57 68.4
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 8.0e-16 86.7 60 61.7
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 8.0e-16 86.7 61 60.7
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.8e-15 85.5 60 61.7
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.3e-15 85.1 60 61.7
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 2.3e-15 85.1 60 61.7
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.3e-15 85.1 60 61.7
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.3e-15 85.1 60 61.7
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 2.3e-15 85.1 60 61.7
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 8.8e-15 83.2 60 56.7
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 2.6e-14 81.6 61 60.7
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.4e-14 80.9 60 58.3
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.7e-14 80.5 60 58.3
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.1e-12 76.3 50 66.0
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.4e-12 75.1 58 53.4
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.3e-10 69.3 56 60.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.2e-09 63.5 56 55.4
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 3.6e-08 61.2 64 51.6
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 5.2e-07 57.4 35 71.4
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.2e-06 56.2 66 39.4


User provided reference genes

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