Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.2e-309 1063.5 532 100.0
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.0e-220 769.2 493 79.3
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.8e-208 727.2 563 68.4
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.1e-189 667.2 510 67.1
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 2.8e-185 652.5 499 66.1
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 8.9e-184 647.5 518 65.3
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 4.9e-182 641.7 506 66.2
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.1e-181 640.6 343 93.3
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 7.0e-181 637.9 498 67.3
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 6.6e-179 631.3 497 65.8
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 4.3e-178 628.6 492 65.9
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 7.3e-178 627.9 494 65.8
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 1.6e-177 626.7 492 65.4
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 6.2e-177 624.8 492 65.4
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.0e-176 622.1 513 62.6
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 1.2e-175 620.5 507 64.9
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 1.5e-175 620.2 502 62.7
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.4e-175 619.0 513 62.6
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 7.5e-175 617.8 503 62.8
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 2.9e-174 615.9 492 64.8
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.9e-174 615.1 512 61.5
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 6.4e-174 614.8 484 62.8
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 6.4e-174 614.8 503 61.6
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 2.4e-173 612.8 438 68.7
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 3.2e-173 612.5 499 63.1
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 7.1e-173 611.3 499 62.3
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 7.1e-173 611.3 509 59.5
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 1.2e-172 610.5 462 66.2
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.1e-172 609.8 456 67.1
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 1.0e-171 607.4 506 63.4
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 1.7e-171 606.7 467 64.9
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.1e-170 604.0 509 58.5
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 1.5e-170 603.6 500 61.4
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 2.5e-170 602.8 501 62.1
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 2.5e-170 602.8 487 62.0
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 3.3e-170 602.4 504 60.1
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.3e-170 602.4 502 61.4
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.1e-168 597.4 513 59.5
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.8e-168 596.7 492 61.6
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 5.2e-168 595.1 492 62.0
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 5.2e-168 595.1 456 66.7
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 6.8e-168 594.7 498 61.8
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 1.2e-167 594.0 485 61.0
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 1.5e-167 593.6 509 58.5
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 1.5e-167 593.6 520 61.9
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 2.2e-166 589.7 492 60.2
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.9e-166 589.3 490 61.0
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 4.9e-166 588.6 489 63.2
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 8.3e-166 587.8 493 62.7
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.1e-165 587.4 495 60.8
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.1e-165 587.4 495 60.8
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.1e-165 587.4 504 58.9
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.4e-165 587.0 504 60.9
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.9e-165 586.6 489 62.8
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 2.4e-165 586.3 482 61.0
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 2.4e-165 586.3 507 59.8
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 9.2e-165 584.3 508 58.7
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.1e-164 583.2 489 62.8
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 2.1e-164 583.2 476 60.9
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 6.0e-164 581.6 494 59.9
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 7.8e-164 581.3 493 60.4
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 7.8e-164 581.3 508 59.4
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 1.3e-163 580.5 432 64.1
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.7e-163 580.1 483 59.8
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.7e-163 580.1 492 60.0
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 2.3e-163 579.7 495 60.2
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.3e-163 579.7 489 62.4
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 3.9e-163 578.9 492 60.0
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 6.6e-163 578.2 486 59.7
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 8.6e-163 577.8 515 59.2
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 4.3e-162 575.5 492 59.8
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 3.6e-161 572.4 462 61.5
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 3.6e-161 572.4 423 64.8
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 4.7e-161 572.0 510 56.7
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.1e-160 570.9 489 61.6
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.4e-160 570.5 497 59.0
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.8e-160 570.1 523 57.6
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 3.1e-160 569.3 436 64.0
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 5.2e-160 568.5 410 69.3
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 5.8e-159 565.1 492 59.8
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 5.8e-159 565.1 412 66.5
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 3.2e-157 559.3 512 57.0
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 9.3e-157 557.8 489 60.9
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 1.5e-154 550.4 513 57.7
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 1.6e-153 547.0 487 58.7
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 6.9e-152 541.6 443 62.1
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.2e-151 540.8 508 56.5
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 3.4e-151 539.3 509 55.8
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 8.4e-150 534.6 443 61.4
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 7.1e-149 531.6 494 56.7
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 3.5e-148 529.3 488 54.9
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 9.6e-146 521.2 500 54.2
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 2.1e-145 520.0 490 55.1
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.4e-144 517.3 496 54.0
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.4e-143 512.7 387 65.4
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 7.6e-143 511.5 400 63.0
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 9.9e-143 511.1 400 63.2
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 9.9e-143 511.1 457 59.1
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 8.4e-142 508.1 482 55.8
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 4.2e-141 505.8 457 57.8
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 3.0e-139 499.6 346 69.4
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 1.5e-138 497.3 489 53.0
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.9e-138 496.9 436 55.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 5.3e-136 488.8 450 57.3
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 6.9e-136 488.4 345 67.0
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.9e-134 482.3 347 68.9
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 2.5e-133 479.9 355 67.3
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.4e-104 383.6 282 65.6
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.6e-92 344.4 226 76.1
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 8.8e-91 338.6 498 41.4
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 4.2e-85 319.7 403 46.2
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 5.7e-82 309.3 426 42.0
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 2.7e-79 300.4 255 62.0
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.0e-78 298.5 167 87.4
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 5.6e-77 292.7 211 68.7
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.6e-74 283.9 284 53.9
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 7.0e-72 275.8 422 40.5
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 3.5e-71 273.5 198 67.2
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.2e-66 258.5 490 35.1
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.9e-57 226.5 120 94.2
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 6.0e-55 219.5 183 60.1
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.2e-52 211.8 335 40.6
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.2e-52 211.8 110 95.5
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.2e-52 211.8 332 40.1
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 8.1e-52 209.1 113 90.3
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.6e-47 193.4 195 54.9
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.2e-44 185.3 453 29.6
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.2e-40 170.2 272 40.8
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 7.3e-37 159.5 165 51.5
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 2.6e-34 151.0 236 35.6
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.5e-21 108.6 75 70.7
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.6e-20 105.1 110 50.0
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 2.8e-20 104.4 78 61.5
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 3.3e-13 80.9 78 55.1
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 7.4e-13 79.7 64 60.9


User provided reference genes

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