Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 4.7e-186 654.4 341 100.0
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 1.4e-150 536.6 340 82.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.1e-138 496.1 338 74.6
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 3.6e-138 495.4 337 74.5
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 3.1e-137 492.3 338 74.3
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 8.9e-137 490.7 345 73.3
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 2.0e-136 489.6 337 74.2
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 3.4e-136 488.8 337 74.2
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 4.4e-136 488.4 344 73.5
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 2.2e-135 486.1 303 78.9
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 8.3e-135 484.2 338 73.1
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 1.6e-133 479.9 344 70.3
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 7.8e-133 477.6 334 72.8
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 1.7e-132 476.5 333 72.4
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 3.0e-132 475.7 371 67.4
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.6e-130 469.9 332 71.7
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 3.6e-130 468.8 347 68.0
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.6e-130 468.8 333 72.4
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 6.2e-130 468.0 336 72.3
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 8.1e-130 467.6 336 72.0
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 3.1e-129 465.7 340 69.4
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.5e-128 463.4 345 72.2
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.5e-128 463.4 339 68.7
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.5e-128 463.4 334 70.1
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 2.0e-128 463.0 330 70.3
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 2.0e-128 463.0 339 71.7
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 5.8e-128 461.5 335 68.7
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 6.4e-127 458.0 332 71.7
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 9.2e-126 454.1 338 68.0
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 9.2e-126 454.1 329 72.6
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-125 453.8 333 69.1
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.2e-125 453.8 342 67.8
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.6e-125 453.4 337 70.0
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.1e-125 453.0 339 68.1
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 6.0e-125 451.4 339 67.8
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.3e-124 450.3 344 66.3
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 1.7e-124 449.9 335 70.1
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 2.3e-124 449.5 339 67.3
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 2.3e-124 449.5 337 69.7
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 3.0e-124 449.1 338 68.9
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 3.9e-124 448.7 351 68.1
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 3.9e-124 448.7 337 67.7
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 6.6e-124 448.0 332 69.6
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 6.6e-124 448.0 340 67.1
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 8.6e-124 447.6 336 67.9
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 8.6e-124 447.6 336 67.9
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.9e-123 446.4 336 67.6
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 2.5e-123 446.0 336 67.3
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 2.5e-123 446.0 339 66.4
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 5.6e-123 444.9 321 72.0
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 7.3e-123 444.5 340 66.8
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.2e-122 443.7 332 68.4
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.6e-122 443.4 367 61.9
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 2.8e-122 442.6 339 66.4
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 3.6e-122 442.2 336 67.9
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 4.7e-122 441.8 347 67.1
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.1e-121 440.7 344 66.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.2e-120 437.2 327 68.5
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.2e-120 437.2 341 67.2
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.5e-120 436.8 335 66.9
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 3.4e-120 435.6 334 65.9
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 4.4e-120 435.3 338 66.3
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 7.6e-120 434.5 349 64.5
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 9.9e-120 434.1 347 67.4
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 2.2e-119 433.0 338 67.5
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 4.9e-119 431.8 344 65.7
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 4.9e-119 431.8 338 64.8
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.4e-118 429.5 338 65.7
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 9.3e-118 427.6 305 70.5
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 1.6e-117 426.8 300 71.7
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 2.1e-117 426.4 342 66.4
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.5e-117 425.6 350 64.9
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.0e-116 424.1 361 64.5
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 5.1e-116 421.8 337 64.4
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 1.1e-115 420.6 322 68.0
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 7.3e-115 417.9 329 66.3
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 7.3e-115 417.9 350 63.7
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 1.6e-114 416.8 350 64.0
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.3e-111 407.1 346 65.0
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 1.6e-109 400.2 342 61.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.0e-104 383.3 333 63.1
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.3e-103 380.6 303 67.0
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.8e-103 379.0 348 60.6
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 2.4e-102 376.3 341 58.4
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 7.1e-102 374.8 321 60.7
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 4.6e-101 372.1 264 71.2
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.5e-99 367.1 270 69.6
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.0e-96 356.7 399 51.6
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.1e-94 350.9 332 58.7
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 3.2e-94 349.4 262 69.1
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 2.7e-93 346.3 340 57.9
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 9.6e-91 337.8 233 72.5
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 6.3e-90 335.1 266 66.5
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.4e-89 334.0 243 71.6
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 2.2e-87 326.6 233 73.0
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 2.5e-86 323.2 230 70.9
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 7.2e-86 321.6 332 56.0
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 7.2e-86 321.6 276 61.6
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 9.3e-86 321.2 334 54.8
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 2.4e-81 306.6 398 47.2
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.8e-76 290.4 305 52.5
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 4.2e-70 269.2 312 48.7
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 2.0e-67 260.4 184 70.7
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.6e-67 260.0 185 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 3.5e-64 249.6 274 48.5
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 1.3e-63 247.7 249 53.4
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 3.6e-61 239.6 180 70.0
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 7.0e-57 225.3 321 41.4
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 4.7e-53 212.6 224 53.6
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 1.7e-39 167.5 100 82.0
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 3.0e-31 140.2 90 71.1
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 1.5e-27 127.9 74 81.1
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 3.4e-27 126.7 108 56.5
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 5.4e-25 119.4 273 33.0
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 8.6e-23 112.1 89 61.8
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 5.6e-22 109.4 89 61.8
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.4e-20 104.8 60 81.7
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 1.8e-20 104.4 259 31.7
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 3.3e-14 83.6 77 54.5
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 1.5e-11 74.7 205 28.8
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 7.6e-11 72.4 54 64.8
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 7.6e-11 72.4 54 64.8
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 1.4e-09 68.2 42 78.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.3e-07 60.8 186 26.9
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.3e-07 60.8 186 26.9
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.0e-07 60.5 175 28.6
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-06 57.4 153 27.5
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 4.3e-06 56.6 166 25.9
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 7.3e-06 55.8 152 28.3
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 9.6e-06 55.5 186 25.8


User provided reference genes

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