Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.2e-213 745.3 373 100.0
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.3e-176 623.2 328 94.2
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.4e-175 619.0 328 93.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.1e-175 618.6 328 93.6
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 6.9e-175 617.5 328 93.3
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.4e-174 615.1 328 92.4
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 4.5e-174 614.8 328 93.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.9e-173 612.1 328 92.7
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.8e-173 611.7 328 92.4
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 8.4e-173 610.5 328 92.4
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.1e-172 610.1 328 92.1
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.1e-172 610.1 328 92.4
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.1e-172 610.1 328 91.5
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.4e-172 609.8 328 92.1
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.4e-172 609.8 328 91.5
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 1.9e-172 609.4 328 91.2
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.1e-172 607.4 328 90.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.2e-171 606.7 328 91.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 2.7e-171 605.5 328 90.5
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 3.5e-171 605.1 328 91.8
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 3.5e-171 605.1 328 91.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 6.0e-171 604.4 328 90.9
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 7.9e-171 604.0 328 91.2
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 7.9e-171 604.0 328 90.9
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 7.9e-171 604.0 328 91.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.0e-170 603.6 329 91.5
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.0e-170 603.6 328 91.2
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.3e-170 603.2 328 90.9
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 1.3e-170 603.2 328 90.9
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.8e-170 602.8 328 90.9
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 3.0e-170 602.1 328 91.2
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 3.9e-170 601.7 328 90.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 3.9e-170 601.7 328 90.9
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 5.1e-170 601.3 328 90.2
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 5.1e-170 601.3 328 91.2
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 5.1e-170 601.3 328 90.5
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 6.7e-170 600.9 328 91.5
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 6.7e-170 600.9 328 90.9
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.1e-169 600.1 328 90.2
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.5e-169 599.7 328 89.9
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.5e-169 599.7 335 88.7
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.5e-169 599.7 328 90.2
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.9e-169 599.4 328 89.6
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.9e-169 599.4 328 90.2
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.5e-169 599.0 328 90.2
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.5e-169 599.0 328 90.2
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.5e-169 599.0 328 90.9
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 3.3e-169 598.6 328 90.5
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 3.3e-169 598.6 328 90.2
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 3.3e-169 598.6 328 89.9
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 5.7e-169 597.8 328 89.6
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 7.4e-169 597.4 328 89.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.6e-168 596.3 328 88.4
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.7e-168 595.1 328 88.7
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 3.7e-168 595.1 328 88.1
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 6.3e-168 594.3 328 89.0
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.4e-167 593.2 328 87.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.4e-167 593.2 328 87.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.4e-167 593.2 328 88.1
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.8e-167 592.8 328 88.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.4e-167 592.4 328 88.7
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.4e-167 592.4 328 88.4
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.1e-167 592.0 328 88.4
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 3.1e-167 592.0 328 87.8
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 4.1e-167 591.7 328 88.1
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 5.3e-167 591.3 328 88.4
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 5.3e-167 591.3 328 88.4
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 6.9e-167 590.9 342 86.8
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 6.9e-167 590.9 328 88.4
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.2e-166 590.1 328 87.5
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.2e-166 590.1 328 88.1
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.2e-166 590.1 328 89.3
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.5e-166 589.7 328 87.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 2.6e-166 589.0 328 88.4
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.6e-166 589.0 329 88.8
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 4.5e-166 588.2 328 89.0
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 7.6e-166 587.4 328 88.1
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 7.6e-166 587.4 328 88.1
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 7.6e-166 587.4 328 88.1
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 7.6e-166 587.4 328 87.2
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.0e-165 587.0 328 88.1
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.0e-165 587.0 328 87.5
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.3e-165 586.6 328 87.2
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 2.2e-165 585.9 328 87.5
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.9e-165 585.5 328 87.8
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 2.9e-165 585.5 328 87.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 3.8e-165 585.1 328 87.5
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 3.8e-165 585.1 328 87.2
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.8e-165 585.1 328 88.1
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.8e-165 585.1 328 88.1
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 6.5e-165 584.3 328 86.3
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.5e-165 584.3 328 89.3
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 6.5e-165 584.3 328 89.0
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.2e-164 582.0 341 85.0
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 7.2e-164 580.9 328 86.0
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 7.2e-164 580.9 328 86.3
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.3e-162 576.6 318 90.6
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.8e-162 576.2 328 86.9
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.3e-162 575.9 328 85.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.9e-162 575.1 328 85.4
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 7.4e-161 570.9 328 83.2
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.7e-160 568.5 328 82.9
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 2.6e-153 545.8 328 78.7
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 5.3e-151 538.1 328 79.6
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.6e-150 535.8 328 82.3
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 7.2e-148 527.7 279 92.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 4.7e-147 525.0 328 75.3
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.0e-146 523.9 328 75.9
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 2.3e-146 522.7 300 86.3
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.0e-141 507.3 279 87.1
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 7.2e-140 501.1 318 77.7
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.1e-139 499.6 328 80.2
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 3.6e-139 498.8 336 72.6
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 2.6e-137 492.7 314 80.6
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 5.3e-135 485.0 282 84.0
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.0e-130 470.7 335 69.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 1.2e-123 447.2 328 65.2
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.2e-118 430.6 225 94.2
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 9.5e-116 421.0 328 70.1
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 3.0e-114 416.0 225 92.0
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 1.2e-113 414.1 328 62.5
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 5.7e-113 411.8 223 91.5
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.2e-104 383.3 230 80.9
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.6e-99 365.9 370 58.9
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-98 363.6 223 78.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.4e-97 359.0 272 67.3
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.4e-89 332.4 256 68.0
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 4.6e-78 295.8 299 48.8
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.1e-74 284.6 246 61.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 5.3e-74 282.3 265 60.0
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.0e-69 268.1 153 85.6
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.6e-65 253.4 328 44.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 9.9e-65 251.5 158 73.4
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.5e-52 211.1 336 41.4
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.2e-47 193.4 184 60.9
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.9e-41 172.6 105 78.1
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.2e-38 164.9 95 87.4
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.5e-28 131.3 95 70.5
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 8.2e-27 125.6 77 76.6
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 3.1e-26 123.6 129 55.8
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 3.1e-26 123.6 129 55.8
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.3e-26 122.9 79 72.2
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.3e-26 122.9 79 72.2
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.1e-22 110.9 67 80.6
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.6e-20 104.0 69 71.0
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 1.3e-16 91.7 105 49.5
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 2.4e-10 70.9 56 66.1


User provided reference genes

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