Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012340 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 8.8e-37 156.4 75 100.0
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 5.7e-28 127.1 69 85.5
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 7.4e-28 126.7 69 84.1
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 9.7e-28 126.3 69 84.1
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 1.3e-27 125.9 69 82.6
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 2.2e-27 125.2 67 85.1
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 2.8e-27 124.8 68 80.9
Haze_07272 Corylus avellana HOM05D003563 ORTHO05D005325 2.8e-27 124.8 69 81.2
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 2.8e-27 124.8 69 82.6
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 2.8e-27 124.8 69 82.6
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 2.8e-27 124.8 68 83.8
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 2.8e-27 124.8 68 83.8
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 2.8e-27 124.8 68 82.4
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 3.7e-27 124.4 68 82.4
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 3.7e-27 124.4 68 82.4
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 3.7e-27 124.4 68 82.4
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 3.7e-27 124.4 68 82.4
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 3.7e-27 124.4 67 83.6
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 6.3e-27 123.6 68 82.4
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 6.3e-27 123.6 68 80.9
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 6.3e-27 123.6 68 82.4
Cc10_g02970 Coffea canephora HOM05D003563 ORTHO05D005325 6.3e-27 123.6 65 86.2
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 6.3e-27 123.6 69 82.6
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 6.3e-27 123.6 68 80.9
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 6.3e-27 123.6 68 80.9
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 80.9
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 80.9
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 8.2e-27 123.2 68 82.4
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 1.1e-26 122.9 68 80.9
Oeu029861.1 Olea europaea HOM05D003563 ORTHO05D005325 1.4e-26 122.5 69 81.2
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.4e-26 122.5 68 80.9
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.4e-26 122.5 68 80.9
CARHR213980 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.8e-26 122.1 68 79.4
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.8e-26 122.1 68 80.9
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 1.8e-26 122.1 68 80.9
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 1.8e-26 122.1 68 80.9
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 2.4e-26 121.7 69 79.7
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 79.4
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 2.4e-26 121.7 68 80.9
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 3.1e-26 121.3 69 79.7
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 80.9
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 80.9
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 82.4
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 80.9
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 80.9
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 80.9
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 3.1e-26 121.3 68 80.9
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 4.1e-26 120.9 69 79.7
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 4.1e-26 120.9 68 79.4
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 4.1e-26 120.9 68 79.4
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 4.1e-26 120.9 68 79.4
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 4.1e-26 120.9 68 79.4
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 4.1e-26 120.9 69 79.7
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 4.1e-26 120.9 68 80.9
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 4.1e-26 120.9 68 76.5
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 4.1e-26 120.9 70 77.1
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 4.1e-26 120.9 67 80.6
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 5.3e-26 120.6 67 80.6
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 5.3e-26 120.6 67 80.6
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 5.3e-26 120.6 67 80.6
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 5.3e-26 120.6 69 78.3
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 5.3e-26 120.6 69 78.3
Glyma.06G032500 Glycine max HOM05D003563 ORTHO05D005325 5.3e-26 120.6 65 84.6
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 7.0e-26 120.2 68 77.9
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 7.0e-26 120.2 68 79.4
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 7.0e-26 120.2 68 80.9
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 7.0e-26 120.2 68 79.4
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 7.0e-26 120.2 68 80.9
Hma1.2p1_0203F.1_g086419 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 9.1e-26 119.8 65 84.6
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 9.1e-26 119.8 68 80.9
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 9.1e-26 119.8 68 79.4
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 9.1e-26 119.8 67 77.6
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 9.1e-26 119.8 68 79.4
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 9.1e-26 119.8 68 80.9
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 9.1e-26 119.8 68 76.5
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 1.2e-25 119.4 68 79.4
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 1.2e-25 119.4 67 82.1
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 1.2e-25 119.4 68 77.9
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 1.5e-25 119.0 67 80.6
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 1.5e-25 119.0 67 80.6
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 1.5e-25 119.0 68 77.9
Ah.02g117440 Amaranthus hybridus HOM05D003563 ORTHO05D005325 2.0e-25 118.6 69 78.3
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 2.0e-25 118.6 68 79.4
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 2.0e-25 118.6 67 74.6
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 2.0e-25 118.6 68 76.5
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 2.6e-25 118.2 67 79.1
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 2.6e-25 118.2 68 79.4
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 2.6e-25 118.2 68 77.9
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 2.6e-25 118.2 68 79.4
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 3.5e-25 117.9 68 77.9
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 4.5e-25 117.5 68 80.9
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 4.5e-25 117.5 68 76.5
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 4.5e-25 117.5 68 76.5
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 5.9e-25 117.1 68 73.5
CSS0015322 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 7.7e-25 116.7 62 87.1
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 7.7e-25 116.7 68 73.5
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 7.7e-25 116.7 68 77.9
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 1.3e-24 115.9 67 77.6
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 1.3e-24 115.9 68 76.5
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 1.7e-24 115.5 68 75.0
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 1.7e-24 115.5 67 79.1
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 2.2e-24 115.2 68 76.5
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 6.5e-24 113.6 68 72.1
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 6.5e-24 113.6 69 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 8.5e-24 113.2 68 72.1
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.5e-23 111.7 67 71.6
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 3.2e-23 111.3 67 70.1
PSO782G5532 Papaver somniferum HOM05D003563 ORTHO05D015420 7.2e-23 110.2 63 79.4
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 7.2e-23 110.2 68 70.6
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 7.2e-23 110.2 68 69.1
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.6e-22 109.0 58 84.5
PSO210G3800 Papaver somniferum HOM05D003563 ORTHO05D015420 1.6e-22 109.0 66 74.2
PSO675G6005 Papaver somniferum HOM05D003563 ORTHO05D015420 1.6e-22 109.0 66 74.2
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.7e-22 108.2 68 70.6
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 4.7e-22 107.5 72 68.1
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.4e-21 105.9 67 68.7
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 3.0e-21 104.8 120 49.2
Hma1.2p1_0105F.1_g050879 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.5e-20 102.4 56 80.4
Hma1.2p1_0105F.1_g050870 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 2.0e-20 102.1 56 78.6
Hma1.2p1_0105F.1_g050873 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 2.0e-20 102.1 56 78.6
Hma1.2p1_0105F.1_g050876 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 2.0e-20 102.1 56 78.6
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 2.7e-14 81.6 71 60.6
CSS0026525 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 6.8e-13 77.0 65 63.1
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.0e-12 75.5 69 53.6
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 1.7e-11 72.4 56 62.5
GSVIVG01037334001 Vitis vinifera HOM05D003563 ORTHO05D015420 4.1e-10 67.8 44 68.2
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 2.7e-09 65.1 41 75.6
PSO478G3448 Papaver somniferum HOM05D003563 ORTHO05D015420 4.5e-09 64.3 44 63.6
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 1.3e-08 62.8 38 78.9
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 2.2e-08 62.0 63 49.2
Haze_26669 Corylus avellana HOM05D003563 ORTHO05D005325 2.5e-07 58.5 54 48.1


User provided reference genes

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