Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012318 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D014543 7.4e-111 404.1 230 100.0
CSS0044031 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D014543 9.5e-42 174.5 109 84.4
CSS0019102 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 5.8e-39 165.2 83 98.8
Nn5g29821 Nelumbo nucifera HOM05D000141 ORTHO05D001311 2.5e-34 149.8 83 86.7
Rhsim08G0017900 Rhododendron simsii HOM05D000141 ORTHO05D001311 3.3e-34 149.4 96 75.0
vmacro18541 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 3.6e-33 146.0 96 76.0
Dinv27017 Davidia involucrata HOM05D000141 ORTHO05D001311 1.4e-32 144.1 83 84.3
Actinidia25297 Actinidia chinensis HOM05D000141 ORTHO05D001311 2.4e-32 143.3 86 81.4
Haze_03903 Corylus avellana HOM05D000141 ORTHO05D001311 6.8e-32 141.7 83 80.7
Dinv36958 Davidia involucrata HOM05D000141 ORTHO05D001311 8.9e-32 141.4 86 77.9
Actinidia06505 Actinidia chinensis HOM05D000141 ORTHO05D001311 1.5e-31 140.6 83 81.9
GSVIVG01003948001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.0e-31 140.2 85 77.6
Cfa006861 Carpinus fangiana HOM05D000141 ORTHO05D001311 3.4e-31 139.4 83 79.5
CiPaw.07G045600 Carya illinoinensis HOM05D000141 ORTHO05D001311 4.4e-31 139.0 83 80.7
QL06p036404 Quercus lobata HOM05D000141 ORTHO05D001311 5.8e-31 138.7 83 79.5
TAR625G0953 Trochodendron aralioides HOM05D000141 ORTHO05D001311 4.9e-30 135.6 83 78.3
DCAR_003440 Daucus carota HOM05D000141 ORTHO05D001311 8.4e-30 134.8 83 79.5
TAR256G0003 Trochodendron aralioides HOM05D000141 ORTHO05D001311 8.4e-30 134.8 83 78.3
Migut.H02276 Erythranthe guttata HOM05D000141 ORTHO05D001311 1.1e-29 134.4 83 77.1
Gohir.A12G085600 Gossypium hirsutum HOM05D000141 ORTHO05D001311 2.4e-29 133.3 83 73.5
Gohir.D12G083700 Gossypium hirsutum HOM05D000141 ORTHO05D001311 3.2e-29 132.9 83 74.7
Rhsim03G0006800 Rhododendron simsii HOM05D000067 ORTHO05D001311 3.2e-29 132.9 86 74.4
MSTRG.2607 Avicennia marina HOM05D000141 ORTHO05D001311 4.2e-29 132.5 83 74.7
Prupe.6G205100 Prunus persica HOM05D000141 ORTHO05D001311 4.2e-29 132.5 83 75.9
Eucgr.I00567 Eucalyptus grandis HOM05D000141 ORTHO05D001311 7.1e-29 131.7 83 73.5
CAN.G1813.5 Capsicum annuum HOM05D000141 ORTHO05D001311 9.2e-29 131.3 89 70.8
Duzib147G1503 Durio zibethinus HOM05D000141 ORTHO05D001311 1.2e-28 131.0 83 72.3
Gorai.008G093800 Gossypium raimondii HOM05D000141 ORTHO05D001311 1.2e-28 131.0 83 73.5
Lju188C9T2 Lonicera japonica HOM05D000141 ORTHO05D001311 1.6e-28 130.6 83 73.5
CANSAT01G3278 Cannabis sativa HOM05D000141 ORTHO05D001311 2.1e-28 130.2 83 72.3
Peaxi162Scf01414g00011 Petunia axillaris HOM05D000141 ORTHO05D001311 2.1e-28 130.2 89 68.5
COL.COLO4_27381 Corchorus olitorius HOM05D000141 ORTHO05D001311 2.7e-28 129.8 83 69.9
Duzib187G1520 Durio zibethinus HOM05D000141 ORTHO05D001311 2.7e-28 129.8 83 72.3
Cc07_g13820 Coffea canephora HOM05D000141 ORTHO05D001311 3.5e-28 129.4 83 73.5
Aqoxy6G01483 Aquilegia oxysepala HOM05D000141 ORTHO05D001311 4.6e-28 129.0 83 71.1
Nitab4.5_0000402g0070 Nicotiana tabacum HOM05D000141 ORTHO05D001311 6.0e-28 128.6 89 69.7
Peaxi162Scf00085g00531 Petunia axillaris HOM05D000141 ORTHO05D001311 6.0e-28 128.6 89 69.7
SGA_v2.0_scaffold195G40873 Striga asiatica HOM05D000141 ORTHO05D001311 7.8e-28 128.3 83 72.3
Ciclev10024772m.g Citrus clementina HOM05D000141 ORTHO05D001311 1.0e-27 127.9 83 69.9
Glyma.01G021200 Glycine max HOM05D000141 ORTHO05D001311 1.0e-27 127.9 83 74.7
MBI16_g27901_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001311 1.0e-27 127.9 83 73.5
QL09p018403 Quercus lobata HOM05D000141 ORTHO05D001311 1.0e-27 127.9 83 68.7
TWI53G1166 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 1.0e-27 127.9 83 68.7
Hund14076 Selenicereus undatus HOM05D000141 ORTHO05D001311 1.3e-27 127.5 83 72.3
Ah.03g143250 Amaranthus hybridus HOM05D000141 ORTHO05D001311 1.7e-27 127.1 84 70.2
Manes.13G102000 Manihot esculenta HOM05D000141 ORTHO05D001311 1.7e-27 127.1 83 69.9
RcHm_v2.0_Chr2g0110681 Rosa chinensis HOM05D000141 ORTHO05D001311 1.7e-27 127.1 83 72.3
AUR62003690 Chenopodium quinoa HOM05D000141 ORTHO05D001311 3.0e-27 126.3 84 72.6
Glyma.09G200800 Glycine max HOM05D000141 ORTHO05D001311 3.0e-27 126.3 83 73.5
Thecc.08G073700 Theobroma cacao HOM05D000141 ORTHO05D001311 3.0e-27 126.3 83 68.7
TWI74G0124 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 3.0e-27 126.3 83 68.7
FvH4_1g19311 Fragaria vesca HOM05D000141 ORTHO05D001311 3.9e-27 125.9 83 71.1
FAN19G0828 Fragaria x ananassa HOM05D000141 ORTHO05D001311 3.9e-27 125.9 83 71.1
FAN23G2724 Fragaria x ananassa HOM05D000141 ORTHO05D001311 3.9e-27 125.9 83 71.1
FAN26G0872 Fragaria x ananassa HOM05D000141 ORTHO05D001311 3.9e-27 125.9 83 71.1
Sopen11g005660 Solanum pennellii HOM05D000141 ORTHO05D001311 3.9e-27 125.9 89 67.4
PGSC0003DMG400016188 Solanum tuberosum HOM05D000141 ORTHO05D001311 3.9e-27 125.9 89 67.4
AUR62018001 Chenopodium quinoa HOM05D000141 ORTHO05D001311 5.1e-27 125.6 84 72.6
COL.COLO4_35277 Corchorus olitorius HOM05D000141 ORTHO05D001311 5.1e-27 125.6 83 67.5
Dinv42594 Davidia involucrata HOM05D000141 ORTHO05D001311 6.6e-27 125.2 83 69.9
PGR031G0460 Punica granatum HOM05D000141 ORTHO05D001311 6.6e-27 125.2 83 68.7
CiPaw.07G163200 Carya illinoinensis HOM05D000141 ORTHO05D001311 8.7e-27 124.8 83 68.7
CSS0024215 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 1.1e-26 124.4 88 63.6
HanXRQChr14g0444581 Helianthus annuus HOM05D000141 ORTHO05D001311 1.1e-26 124.4 88 67.0
PSO541G4774 Papaver somniferum HOM05D000141 ORTHO05D001311 1.1e-26 124.4 83 73.5
Atru.chr3.1212 Acer truncatum HOM05D000141 ORTHO05D001311 1.5e-26 124.0 83 69.9
Duzib093G0423 Durio zibethinus HOM05D000141 ORTHO05D001311 1.5e-26 124.0 83 66.3
PSO675G0929 Papaver somniferum HOM05D000141 ORTHO05D001311 1.5e-26 124.0 83 72.3
Solyc11g010920.3 Solanum lycopersicum HOM05D000141 ORTHO05D001311 1.5e-26 124.0 89 67.4
Sc16g0000650 Simmondsia chinensis HOM05D000141 ORTHO05D001311 1.9e-26 123.6 83 69.9
Sc16g0001010 Simmondsia chinensis HOM05D000141 ORTHO05D001311 1.9e-26 123.6 83 69.9
Thecc.01G087800 Theobroma cacao HOM05D000141 ORTHO05D001311 1.9e-26 123.6 83 67.5
GSVIVG01009205001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.9e-26 123.6 84 70.2
Cpa.g.sc55.5 Carica papaya HOM05D000141 ORTHO05D001311 2.5e-26 123.2 89 66.3
Oeu012260.1 Olea europaea HOM05D000141 ORTHO05D001311 4.3e-26 122.5 83 67.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 5.6e-26 122.1 83 67.5
Atru.chr2.3472 Acer truncatum HOM05D000141 ORTHO05D001311 7.3e-26 121.7 83 67.5
FAN28G1133 Fragaria x ananassa HOM05D000141 ORTHO05D001311 7.3e-26 121.7 83 69.9
arahy.Tifrunner.gnm1.ann1.87KB7U Arachis hypogaea HOM05D000141 ORTHO05D001311 1.3e-25 120.9 83 72.3
arahy.Tifrunner.gnm1.ann1.DW36QZ Arachis hypogaea HOM05D000141 ORTHO05D001311 1.3e-25 120.9 83 72.3
ECA238G1069 Erigeron canadensis HOM05D000141 ORTHO05D001311 1.3e-25 120.9 83 63.9
Phvul.002G145000 Phaseolus vulgaris HOM05D000141 ORTHO05D001311 1.3e-25 120.9 83 71.1
VMungo1215G1944 Vigna mungo HOM05D000141 ORTHO05D001311 1.6e-25 120.6 83 71.1
Atru.chr13.980 Acer truncatum HOM05D000141 ORTHO05D001311 2.1e-25 120.2 83 68.7
Lalb_Chr16g0381571 Lupinus albus HOM05D000141 ORTHO05D001311 2.1e-25 120.2 83 69.9
Lalb_Chr09g0325901 Lupinus albus HOM05D000141 ORTHO05D001311 4.8e-25 119.0 83 68.7
Psat2g091360 Pisum sativum HOM05D000141 ORTHO05D001311 4.8e-25 119.0 85 70.6
TPR.G28819 Trifolium pratense HOM05D000141 ORTHO05D001311 4.8e-25 119.0 83 69.9
HanXRQChr07g0188821 Helianthus annuus HOM05D000141 ORTHO05D001311 6.2e-25 118.6 83 65.1
Cfa013813 Carpinus fangiana HOM05D000141 ORTHO05D001311 8.1e-25 118.2 83 65.1
Ca_25221_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001311 8.1e-25 118.2 83 68.7
Lsat_1_v5_gn_2_69721 Lactuca sativa HOM05D000141 ORTHO05D001311 8.1e-25 118.2 83 65.1
Medtr5g031470 Medicago truncatula HOM05D000141 ORTHO05D001311 1.1e-24 117.9 83 68.7
Medtr5g049820 Medicago truncatula HOM05D000141 ORTHO05D001311 1.1e-24 117.9 83 68.7
Actinidia29659 Actinidia chinensis HOM05D000141 ORTHO05D001311 2.4e-24 116.7 82 64.6
A09p57390 Brassica napus HOM05D000141 ORTHO05D001311 2.4e-24 116.7 83 66.3
Gohir.A05G218500 Gossypium hirsutum HOM05D000141 ORTHO05D001311 3.1e-24 116.3 83 63.9
Medtr5g049620 Medicago truncatula HOM05D000141 ORTHO05D001311 3.1e-24 116.3 83 67.5
Lsat_1_v5_gn_3_63140 Lactuca sativa HOM05D000141 ORTHO05D001311 4.0e-24 115.9 83 63.9
Lj4A86G78 Lonicera japonica HOM05D000141 ORTHO05D001311 4.0e-24 115.9 83 63.9
Gorai.009G228400 Gossypium raimondii HOM05D000141 ORTHO05D001311 5.3e-24 115.5 83 63.9
Aa31LG7G14210 Aethionema arabicum HOM05D000141 ORTHO05D001311 6.9e-24 115.2 92 59.8
Gohir.D05G221200 Gossypium hirsutum HOM05D000141 ORTHO05D001311 6.9e-24 115.2 83 62.7
unitig_62.g23413 Utricularia gibba HOM05D000141 ORTHO05D001311 6.9e-24 115.2 83 61.4
AT2G22610 Arabidopsis thaliana HOM05D000141 ORTHO05D001311 9.0e-24 114.8 83 63.9
Lj2g0018682 Lotus japonicus HOM05D000141 ORTHO05D001311 9.0e-24 114.8 83 67.5
PSO765G0220 Papaver somniferum HOM05D000141 ORTHO05D014543 9.0e-24 114.8 82 65.9
Carub.0004s0176 Capsella rubella HOM05D000141 ORTHO05D001311 1.2e-23 114.4 83 65.1
BcaC07g41046 Brassica carinata HOM05D000141 ORTHO05D001311 1.5e-23 114.0 83 65.1
Ciclev10000147m.g Citrus clementina HOM05D000141 ORTHO05D001311 1.5e-23 114.0 83 62.7
Sp4g01650 Schrenkiella parvula HOM05D000141 ORTHO05D001311 1.5e-23 114.0 83 63.9
ATR0767G147 Amborella trichopoda HOM05D000141 ORTHO05D001311 2.0e-23 113.6 83 62.7
AL4G12150 Arabidopsis lyrata HOM05D000141 ORTHO05D001311 2.0e-23 113.6 83 63.9
Thhalv10000025m.g Eutrema salsugineum HOM05D000141 ORTHO05D001311 2.6e-23 113.2 83 63.9
Rhsim07G0213200 Rhododendron simsii HOM05D000141 ORTHO05D001311 2.6e-23 113.2 83 61.4
CDE02G4125 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 2.2e-22 110.2 83 65.1
Cc10_g08390 Coffea canephora HOM05D000141 ORTHO05D001311 2.2e-22 110.2 84 58.3
Zm00001eb000890 Zea mays HOM05D000141 ORTHO05D001311 4.9e-22 109.0 83 62.7
Prupe.1G535100 Prunus persica HOM05D000141 ORTHO05D001311 6.4e-22 108.6 83 61.4
Potri.002G110600 Populus trichocarpa HOM05D000141 ORTHO05D001311 1.1e-21 107.8 83 61.4
CARHR113830 Cardamine hirsuta HOM05D000141 ORTHO05D001311 1.4e-21 107.5 83 63.9
THA.LOC104807667 Tarenaya hassleriana HOM05D000141 ORTHO05D001311 1.4e-21 107.5 83 60.2
FAN08G1721 Fragaria x ananassa HOM05D000141 ORTHO05D001311 3.2e-21 106.3 86 54.7
FAN18G0148 Fragaria x ananassa HOM05D000141 ORTHO05D001311 3.2e-21 106.3 86 54.7
RcHm_v2.0_Chr7g0234871 Rosa chinensis HOM05D000141 ORTHO05D001311 3.2e-21 106.3 83 59.0
PSO349G0084 Papaver somniferum HOM05D000141 ORTHO05D014543 7.1e-21 105.1 82 62.2
vmacro04638 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 9.3e-21 104.8 83 60.2
arahy.Tifrunner.gnm1.ann1.EWVD58 Arachis hypogaea HOM05D000141 ORTHO05D001311 1.2e-20 104.4 82 59.8
arahy.Tifrunner.gnm1.ann1.ZX9CFH Arachis hypogaea HOM05D000141 ORTHO05D001311 1.2e-20 104.4 82 59.8
FvH4_5g34300 Fragaria vesca HOM05D000141 ORTHO05D001311 1.6e-20 104.0 83 56.6
Sabra02G0087100 Salix brachista HOM05D000141 ORTHO05D001311 2.1e-20 103.6 83 61.4
MD15G1388700 Malus domestica HOM05D000141 ORTHO05D001311 1.0e-19 101.3 83 56.6
MD08G1202900 Malus domestica HOM05D000141 ORTHO05D001311 1.7e-19 100.5 83 55.4
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.3e-18 95.9 52 92.3
HPP92_015090 Vanilla planifolia HOM05D000141 ORTHO05D001311 9.6e-18 94.7 83 54.2
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-17 94.4 86 62.8
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-17 94.4 52 90.4
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-17 94.4 52 90.4
CSS0044124 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-17 94.4 52 90.4
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-17 94.4 52 90.4
Cpa.g.sc21.41 Carica papaya HOM05D000141 ORTHO05D001311 1.6e-17 94.0 79 57.0
CSS0022838 Camellia sinensis var. sinensis HOM05D042287 ORTHO05D000106 8.1e-17 91.7 52 86.5
SEGI_20995 Sequoiadendron giganteum HOM05D000141 ORTHO05D001311 2.0e-15 87.0 88 48.9
Lsat_1_v5_gn_3_86981 Lactuca sativa HOM05D000141 ORTHO05D014543 3.8e-14 82.8 89 47.2
Hma1.2p1_1754F.1_g300880 Hydrangea macrophylla HOM05D000141 ORTHO05D001311 4.9e-14 82.4 53 69.8
CDE04G2493 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 1.6e-12 77.4 53 62.3
Os02g0609800 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D014543 2.1e-12 77.0 83 50.6
Zm00001eb153160 Zea mays HOM05D027840 ORTHO05D014543 2.1e-12 77.0 70 52.9
Rhsim02G0019400 Rhododendron simsii HOM05D000141 ORTHO05D014543 4.6e-12 75.9 53 66.0
Haze_22487 Corylus avellana HOM05D000141 ORTHO05D001311 2.3e-11 73.6 53 62.3
Zm00001eb121850 Zea mays HOM05D027840 ORTHO05D014543 3.0e-11 73.2 63 57.1
BraA09t41131Z Brassica rapa HOM05D000141 ORTHO05D001311 1.1e-10 71.2 53 62.3
C08p40470 Brassica napus HOM05D000141 ORTHO05D001311 1.9e-10 70.5 55 58.2
BolC8t51618H Brassica oleracea HOM05D000141 ORTHO05D001311 1.9e-10 70.5 55 58.2
Os02g0213450 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D014543 5.6e-10 68.9 62 58.1
CDE02G4435 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 9.6e-10 68.2 54 53.7
Aa31LG6G14950 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.8e-09 66.6 53 56.6
SEGI_11283 Sequoiadendron giganteum HOM05D000141 ORTHO05D001311 1.1e-08 64.7 90 40.0
MBI02_g29871_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001311 1.4e-08 64.3 91 38.5
ATR1098G139 Amborella trichopoda HOM05D000141 ORTHO05D001311 4.0e-08 62.8 95 33.7
TAR629G2376 Trochodendron aralioides HOM05D000141 ORTHO05D014543 3.4e-07 59.7 32 84.4
CiPaw.12G006000 Carya illinoinensis HOM05D000141 ORTHO05D001311 5.8e-07 58.9 90 36.7
COL.COLO4_07051 Corchorus olitorius HOM05D000141 ORTHO05D001311 1.0e-06 58.2 90 35.6
Manes.15G101400 Manihot esculenta HOM05D000141 ORTHO05D001311 1.7e-06 57.4 90 34.4
Potri.001G436200 Populus trichocarpa HOM05D000141 ORTHO05D001311 1.7e-06 57.4 90 36.7
TAR624G0806 Trochodendron aralioides HOM05D000141 ORTHO05D001311 1.7e-06 57.4 93 34.4
CSS0014845 Camellia sinensis var. sinensis HOM05D000014 ORTHO05D000016 2.9e-06 56.6 91 44.0
Manes.03G090900 Manihot esculenta HOM05D000141 ORTHO05D001311 3.8e-06 56.2 90 36.7
QL04p072968 Quercus lobata HOM05D000141 ORTHO05D001311 3.8e-06 56.2 90 35.6
TAR512G0002 Trochodendron aralioides HOM05D000141 ORTHO05D001311 3.8e-06 56.2 93 33.3
ECA234G2348 Erigeron canadensis HOM05D000141 ORTHO05D001311 4.9e-06 55.8 88 34.1
Prupe.4G144400 Prunus persica HOM05D000141 ORTHO05D001311 4.9e-06 55.8 90 36.7
GSVIVG01020503001 Vitis vinifera HOM05D000141 ORTHO05D001311 4.9e-06 55.8 90 36.7
EL10Ac4g08530 Beta vulgaris HOM05D000141 ORTHO05D001311 6.4e-06 55.5 88 37.5
Lsat_1_v5_gn_5_121381 Lactuca sativa HOM05D000141 ORTHO05D001311 6.4e-06 55.5 91 33.0
RcHm_v2.0_Chr5g0027091 Rosa chinensis HOM05D000141 ORTHO05D001311 6.4e-06 55.5 90 36.7
Gohir.A01G036700 Gossypium hirsutum HOM05D000141 ORTHO05D001311 8.4e-06 55.1 90 35.6
VMungo1080G0426 Vigna mungo HOM05D000141 ORTHO05D001311 8.4e-06 55.1 90 34.4


User provided reference genes

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